View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_13 (Length: 370)
Name: NF20486_low_13
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 193 - 361
Target Start/End: Original strand, 29445828 - 29445996
Alignment:
| Q |
193 |
tatttaattaagatgtctcattccattgcatatctcctatcctaaattagaaggaatggaaactaatagaagaggatggaatgaaatggattccatcatc |
292 |
Q |
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| T |
29445828 |
tatttaattaagatgtctcattccattgcatatctcctatcctaaattagaaggaatggaaactaatagaagaggatggaatgaaatggattccatcatc |
29445927 |
T |
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| Q |
293 |
tttttcatacgactcttttaaatccaaacattattatcttgtttaataccacttgatttcatctcactc |
361 |
Q |
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| T |
29445928 |
tttttcatacgactcttttaaatccaaacaatattatcttgtttaataccacttgatttcatttcactc |
29445996 |
T |
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Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 29445639 - 29445735
Alignment:
| Q |
1 |
tagccaaagaaacccacatgaattatctatcaatacaaccatatatacgcacgaagaaaaggcagcaaaataaatccaaaagaataggcacgcatgc |
97 |
Q |
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| T |
29445639 |
tagccaaagaaacccacatgaattatctatcaatacaatcatatatacgcacgaagaaaaggcagtaaaataaatccaaaagaatacgcatgcatgc |
29445735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 29421006 - 29420929
Alignment:
| Q |
193 |
tatttaattaagatgtctcattccattgcatatctcctatcctaaattagaaggaatggaaactaatagaagaggatggaatg |
275 |
Q |
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| T |
29421006 |
tatttaattaagatatctcattctattgcatatct-----cctaaattagaaggaatggaaattaagggaagaagatggaatg |
29420929 |
T |
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