View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_15 (Length: 337)
Name: NF20486_low_15
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 3701139 - 3700833
Alignment:
| Q |
13 |
agcataggtatcaatcagacacattttgtattatatacagaatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctg |
112 |
Q |
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| T |
3701139 |
agcataggtatcaatcagacacattttgtattatatacagaatatcctctgaagttggtatcgactcatccgttgttgattgcaatacatacggactctg |
3701040 |
T |
|
| Q |
113 |
gtgtttaatgtttctactagcttggaaaggtaaggatcttcttgaatccttatttatttggaatattcctttaaggatttgttgagatttcacttcctaa |
212 |
Q |
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| T |
3701039 |
gtgtttaatgtttctactagcttggaaaggtaaggatcttcttgaatccttatttatttggaatattcctttaaggatttgttgagatttcacttcctaa |
3700940 |
T |
|
| Q |
213 |
caatactattatttcctacttttattgtgtcttgaagttattttcttgtagcattgatgttaactgtgacaaattatgacaggcatatagttgatggaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700939 |
caatactattatttcctacttttattgtgtcttgaagttattttcttgtagcattgatgttaactgtgacaaattatgacaggcatatagttgatggaag |
3700840 |
T |
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| Q |
313 |
ctcagat |
319 |
Q |
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||||||| |
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| T |
3700839 |
ctcagat |
3700833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 6602406 - 6602713
Alignment:
| Q |
13 |
agcataggtatcaatcagacacattttgtattatatacagaatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctg |
112 |
Q |
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||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602406 |
agcataggtatcaattagacacattttgtattgtataca-aatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctg |
6602504 |
T |
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| Q |
113 |
gtgtttaatgtttctactagcttggaaaggtaaggatcttcttgaatccttatttatttggaatattcctttaaggatttgttgagatttcacttcctaa |
212 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| || |
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| T |
6602505 |
gtgtttaatgtttctattagcttggaaaggtaaatatcttcttgaatccttatttatcgttaatattcctttacggatttgttgagattttgcttccgaa |
6602604 |
T |
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| Q |
213 |
caatactattatttcctacttttattgtgtcttgaagttattttcttgtagcattgatgttaactgtga--caaattatgacaggcatatagttgatgga |
310 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
6602605 |
caatactataatttcctacttttattgtgtcttgaagttattttcttgtagcactgatgttaactatgacgcaaattatgacaggcatatagttgatgga |
6602704 |
T |
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| Q |
311 |
agctcagat |
319 |
Q |
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||||||||| |
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| T |
6602705 |
agctcagat |
6602713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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