View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_17 (Length: 319)
Name: NF20486_low_17
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 12596684 - 12596978
Alignment:
| Q |
11 |
atgaagatgtagttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttcttttattatcttacatgatcattaaagataca |
110 |
Q |
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| T |
12596684 |
atgaagatgtagttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttcttttattatcttacatgatcattaaagataca |
12596783 |
T |
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| Q |
111 |
gcagctgtgtttgttcttaaaatattttttacttttcccatcaattggctgaaaacaactatgtttggtttcattatgtcacaagtgcttgtctttgaac |
210 |
Q |
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| T |
12596784 |
gcagctgtgtttgttcttaaaatatttttaacttttcccatcaattggctgaaaacaactatgtttggtttcattatgtcacaagtgcttgtctttgaac |
12596883 |
T |
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| Q |
211 |
atggactttttgtgtttggtttcaatatctcacaagtgtttctctttgtacaaagaatttttatgttgtccattttaaaaatctaatctaaattt |
305 |
Q |
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| T |
12596884 |
atggactttttgtgtttggtttcaatatctcacaagtgtttctctttgtacaaagaatttttatgttgtccattttaaaaatctaatctaaattt |
12596978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3313795 - 3313866
Alignment:
| Q |
11 |
atgaagatgtagttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttctttt |
82 |
Q |
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| T |
3313795 |
atgaggatgtagttgatgtactgaccgaccatactgtaagaatttatctacattgcattttgaatttatttt |
3313866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 3392692 - 3392654
Alignment:
| Q |
37 |
gaccataccgtaagaatttctctacatcgtgttttgaat |
75 |
Q |
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| T |
3392692 |
gaccataccgtaagaatttctctacattgtattttgaat |
3392654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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