View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20486_low_18 (Length: 317)
Name: NF20486_low_18
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 7433769 - 7433471
Alignment:
| Q |
5 |
tacaaaataactattaaatgaaatcaagaacaagttccgaaaccagtcaaaatttgaagcataatgaacatagttctccaaaaatagtagaaactttctt |
104 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
7433769 |
tacaaaatagttattaaatgaaaccaagaacaagttttgaaaccagtcaaaatttgaagcatagtgaacgtagttctccaaaaatagtagaaactttttt |
7433670 |
T |
|
| Q |
105 |
tatttttaaaaagaaacaaaattcttcgttagtaaaagaacacatttttacaaaacataactaaacacctaggaactttaaagaaatgaagaagatctct |
204 |
Q |
| |
|
|| |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7433669 |
tacttttcaaaagaaacaaaattcttcattagtaaaaaaacacatttttacaaaacataactaaacacctaggaactttaaagaaatgaagaagatctct |
7433570 |
T |
|
| Q |
205 |
actcctccaacaagactaccgtgcttttgctgcctatctacatctcactatttaggaaccagttcctaccaaagtagaatgatacatgcatgcatatat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7433569 |
actcctccaacaagactaccgtgcttttgctacctatctacatctcactatttaggaaccagttcctaccaaagtagaatgatacatgcatgcatatat |
7433471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University