View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_19 (Length: 314)
Name: NF20486_low_19
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 39909371 - 39909652
Alignment:
| Q |
16 |
atccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttnnnnnnnnnnnnnncaataaggaggaatatcatcttgtaattat |
115 |
Q |
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| T |
39909371 |
atccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttaaaaaaaaaaaaa-caataaggaggaatatcatcttgtaattat |
39909469 |
T |
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| Q |
116 |
taataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccattccgtgtgtttgcaagggtatatgtgtgtaatatgcttctga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39909470 |
taataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccattccgtgtgtttgcaagggtatatgtgtgtaatatgcttctga |
39909569 |
T |
|
| Q |
216 |
gttgaccgccaattgttcgaaaataaaagttgaatcttaaaattctactcctaagtacataatatttgggtccatctaatatg |
298 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39909570 |
gttgaccaccaattgttcgaaaataaaagttgaatcttaaaattctactcctaagtacataatttttgggtccatctaatatg |
39909652 |
T |
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