View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20486_low_25 (Length: 281)
Name: NF20486_low_25
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 25024579 - 25024339
Alignment:
| Q |
23 |
ggccgtgaaaacagagaagctacaaggcagacgtcagacatggattttcaacacaacttgaaaacaaacataggtttaatcctttccattccagagtgct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25024579 |
ggccgtgaaaacagagaagctacaaggcagacgtcagacatggattttcaacacaacttgaaaacaaacataggtttaatcctttccattccagagtgct |
25024480 |
T |
|
| Q |
123 |
ttagattaaacaacgttaagtgttttcatagtgtaattgagagaaacaatggtgagnnnnnnnctttctttcttgaggagtgttcatgataggattgttc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25024479 |
ttagattaaacaacgttaagtgttttcatagtgtaattgagagaaacaatggtgagtttttttctttctttctttaggagtgttcatgataggattgttc |
25024380 |
T |
|
| Q |
223 |
atttatatcaaggttgagtttgattccaataattggtatga |
263 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25024379 |
atttatatcaaggttgagtttgatttcaataattggtatga |
25024339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University