View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_3 (Length: 538)
Name: NF20486_low_3
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 54460569 - 54460032
Alignment:
| Q |
1 |
catgtactcatagtccttcataggttcaaactcttcttgattcagccagtaatgtacttcatctgaatttcaaaaattattttccatctttagtattggt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54460569 |
catgtactcatagtccttcataggttcaaattcttcttgattcagccagtaatgtacttcatctgaatttcaaaaattattttccatctttagtattggt |
54460470 |
T |
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| Q |
101 |
tctcctttccctacaagtgtcattacttggtctgtttctttgttaacatcatctgtatcattgatcaacaaatgagttttttgtgatatagaggatgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
54460469 |
tctcctttccctacaagtgtcattacttggtctgtttctttgttaacatcatctgtatcagtgatcaacaaatgtgttttttgtgatatagaggatgttg |
54460370 |
T |
|
| Q |
201 |
atgtaggacttgcattattttgatggagtttcttcatattctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaat |
300 |
Q |
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| T |
54460369 |
atgtaggacttgcattattttgatggagtttcttcatattctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaat |
54460270 |
T |
|
| Q |
301 |
ttgacaatgctcacaccataaacgtccaaccttcctcctctttgccaatgcactttccttccatgcttcatcggttgcagcgtcacttctacacccggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54460269 |
ttgacaatgctcacaccataaacgtccaaccttcctcctctttgccaatgcactttccttccatgcttcatcggttgcagcgtcacttctacactcggaa |
54460170 |
T |
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| Q |
401 |
aaacctatcttttggcttttctccacaagctgctcctcaattttagattctgttatatccttatcagcattcatctccacaagcttcttctcattttcgg |
500 |
Q |
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| T |
54460169 |
aaacctatcttttggcttttctccacaagctgctcctcaattttagattctgttatatccttatcagcattcatctccacaagcttcttctcattttcgg |
54460070 |
T |
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| Q |
501 |
atgttgttatacttacaccattatcagcaaccatctca |
538 |
Q |
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| T |
54460069 |
atgttgttatacttacaccattatcagcaaccatctca |
54460032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 54460036 - 54459919
Alignment:
| Q |
420 |
tctccacaagctgctcctcaattttagattctgttatatccttatcagcattcatctccacaagcttcttctcattttcggatgttgttatacttacacc |
519 |
Q |
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|||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
54460036 |
tctcaacaagctgctcctcaattttagattctgttacattcttatcagccttcatctccacaggattcttctcatttttggatgttgttatacttacacc |
54459937 |
T |
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| Q |
520 |
attatcagcaaccatctc |
537 |
Q |
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||||||||| | |||||| |
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| T |
54459936 |
attatcagccatcatctc |
54459919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 54059164 - 54059062
Alignment:
| Q |
231 |
tcttcatattctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaatttgacaatgctcacaccataaacgtccaac |
330 |
Q |
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||||||| ||||| | ||||||||||||||| |||| |||||||||||| ||| |||| || |||||||||||| | ||||||||||||| |||||| |
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| T |
54059164 |
tcttcattttcttaatgtgttttttcccttttttatgctcttccatcacaacttttgaggtagtgccaatttgacagagttcacaccataaacctccaac |
54059065 |
T |
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| Q |
331 |
ctt |
333 |
Q |
| |
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||| |
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| T |
54059064 |
ctt |
54059062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 54460608 - 54460570
Alignment:
| Q |
1 |
catgtactcatagtccttcataggttcaaactcttcttg |
39 |
Q |
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| T |
54460608 |
catgtactcatagtccttcataggttcaaactcttcttg |
54460570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 455
Target Start/End: Original strand, 15037732 - 15037945
Alignment:
| Q |
239 |
ttctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaatttgacaatgctcacaccataaacgtccaaccttcctcc |
338 |
Q |
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||||||| ||||||||||||||| ||||| |||||||||| |||||||| | |||||||||||| ||||||||||||||| || | |||| || |
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| T |
15037732 |
ttctttatgtgttttttcccttttatatgcctttccatcacaacttgtgagttggtgccaatttgacagagctcacaccataaacctctagccttaatca |
15037831 |
T |
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| Q |
339 |
tctttgccaatgcactttccttccatgcttcatcggttgcagcgtcacttctacacccggaaaaacctatcttttggcttttctccacaagctgctcctc |
438 |
Q |
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| | || ||||||||| ||||| |||||| || |||||||| | || ||| | | ||||| ||| |||||| |||||||| || | |||||||| |
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| T |
15037832 |
tttctgtcaatgcact---cttccctgcttcctcagttgcagcaccttttttactctcaaaaaaatctacattttggtttttctccgcatgttgctcctc |
15037928 |
T |
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| Q |
439 |
aattttagattctgtta |
455 |
Q |
| |
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| T |
15037929 |
atttttagattctgtta |
15037945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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