View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_31 (Length: 251)
Name: NF20486_low_31
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 25024342 - 25024172
Alignment:
| Q |
1 |
atgaggctgagtcatgttgaaaatcaaagaccaaattttgaagatgttaatttgacatttctcttgggttcaatcatagtttgaagtctattattggttt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25024342 |
atgaagctgagtcatgttgaaaatcaaagaccaaattttgaagatgttaatttgacatttctcttgggttcaatcatagtttgaagtctattattggttt |
25024243 |
T |
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| Q |
101 |
agaactgtcagaatcatgagagctcatgaagttctgattgtaatatgcaaatattcattgtgtaggctaag |
171 |
Q |
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| T |
25024242 |
agaactgtcagaatcatgagagctcatgaagttctgattgtaatatgcaaatattcattgtgtaggctaag |
25024172 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 25023272 - 25023202
Alignment:
| Q |
167 |
ctaagaagtgaggaagaaaatagttgaacctgtataaacgccaatttccaatcttccttaatgcaattgtt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25023272 |
ctaagaagtgaggaagaaaatagttgaacctgtataaacgccaatttccaatcttccttaatgcaattgtt |
25023202 |
T |
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