View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_33 (Length: 249)
Name: NF20486_low_33
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1904045 - 1903810
Alignment:
| Q |
1 |
ccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgag |
100 |
Q |
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| T |
1904045 |
ccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgag |
1903946 |
T |
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| Q |
101 |
gtgtaaattgtttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattac |
200 |
Q |
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| T |
1903945 |
gtgcaaactgtttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattac |
1903850 |
T |
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| Q |
201 |
gtccagtgactgatttgtcaagtgtcacaactcatgcatc |
240 |
Q |
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| T |
1903849 |
gtccagtgactgatttgtcaagtgtcacaactcattcatc |
1903810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1908278 - 1908043
Alignment:
| Q |
1 |
ccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1908278 |
ccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgag |
1908179 |
T |
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| Q |
101 |
gtgtaaattgtttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattac |
200 |
Q |
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| T |
1908178 |
gtgcaaactgtttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattac |
1908083 |
T |
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| Q |
201 |
gtccagtgactgatttgtcaagtgtcacaactcatgcatc |
240 |
Q |
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| T |
1908082 |
gtccagtgactgatttgtcaagtgtcacaactcattcatc |
1908043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 1898657 - 1898605
Alignment:
| Q |
174 |
acacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtc |
226 |
Q |
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| T |
1898657 |
acacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagtgtc |
1898605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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