View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_36 (Length: 237)
Name: NF20486_low_36
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 41948065 - 41947877
Alignment:
| Q |
48 |
cttcacaaactatacttttaaataatgccttaaaattttaaactatgttgatgtatgacaaaatactgtcgagttccatgaatcgaagcattcttaatnn |
147 |
Q |
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| T |
41948065 |
cttcacaaactatacttttaaataatgccttaaaattttaaactatgttgatgtatgacaaaatactgtcgagttccatgaatcgaagcattcttaataa |
41947966 |
T |
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| Q |
148 |
nnnnnctataaagatgactagattttggtctacaattaaaagtgactagaacagattagttagccgtattacaacatttgatgttgactc |
237 |
Q |
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| T |
41947965 |
aaaaactat-aagatgactagattttggtctacaattaaaagtgactagaacagattagttagccgtattacaacatttgatgttgactc |
41947877 |
T |
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