View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_37 (Length: 237)
Name: NF20486_low_37
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 2059356 - 2059580
Alignment:
| Q |
2 |
atttcatgctatggatgaaattacaaagtataaacattcacttatcgtaaacaatggtcatttgattatgttaaa--tcgatgttttcctagtaaacttg |
99 |
Q |
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| T |
2059356 |
atttcatgctatggatgaa-ttacaaagtataaacattcacttatcgtaaacaatggtcatttgatt-tacaaaacttcgatgttttcctagtaaacttg |
2059453 |
T |
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| Q |
100 |
ctataactcgaatgctcttgggaataatcgttggtccgtattctacaatctttcgaac-----accaagcttgaaagatgaatgcagaatctgagtcgag |
194 |
Q |
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| T |
2059454 |
ctataactcgaatgctcttgggaataatcgttggtccgtattctacaatctttcgaacaccaaaccaagcttgaaagatgaatgcagaatctgagtcgag |
2059553 |
T |
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| Q |
195 |
ctccattatgaatgggtatgatccaaa |
221 |
Q |
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| T |
2059554 |
ctccattatgaatgggtatgatccaaa |
2059580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 2035055 - 2035116
Alignment:
| Q |
2 |
atttcatgctatggatgaaattacaaagtataaacattcacttatcgtaaacaatggtcattt |
64 |
Q |
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| T |
2035055 |
atttcatgctatggatgaa-ttaaaaagtataaacattcacttattgaaaacaaatgtcattt |
2035116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 2048357 - 2048396
Alignment:
| Q |
2 |
atttcatgctatggatgaaattacaaagtataaacattcac |
42 |
Q |
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| T |
2048357 |
atttcatgctatggatgaa-ttacaaagtataaacattcac |
2048396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 2039153 - 2039194
Alignment:
| Q |
2 |
atttcatgctatggatgaaattacaaagtataaacattcactt |
44 |
Q |
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| T |
2039153 |
atttcatgctatggatgaa-ttacaaagcataaacattcactt |
2039194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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