View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_38 (Length: 234)
Name: NF20486_low_38
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_38 |
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| [»] scaffold0640 (2 HSPs) |
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| [»] scaffold0271 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 33323478 - 33323273
Alignment:
| Q |
12 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaattaaatcaactaaatannnnnnnncctgcaaattgcatctagtttcaa |
111 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33323478 |
attatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaattaaatcaactaaatattttttt-cctgcaaattgcatctagtttcaa |
33323380 |
T |
|
| Q |
112 |
gacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33323379 |
gacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaag |
33323280 |
T |
|
| Q |
212 |
aatgaat |
218 |
Q |
| |
|
||||||| |
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|
| T |
33323279 |
aatgaat |
33323273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 1041887 - 1041682
Alignment:
| Q |
12 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaattaaatcaactaaatannnnnnnncctgcaaattgcatctagtttcaa |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1041887 |
attatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaattaaatcaactaaatattttttt-cctgcaaattgcatctagtttcaa |
1041789 |
T |
|
| Q |
112 |
gacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1041788 |
gacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaag |
1041689 |
T |
|
| Q |
212 |
aatgaat |
218 |
Q |
| |
|
||||||| |
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| T |
1041688 |
aatgaat |
1041682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 41192952 - 41192747
Alignment:
| Q |
12 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaattaaatcaactaaatannnnnnnncctgcaaattgcatctagtttcaa |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41192952 |
attatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaattaaatcaactaaatattttttt-cctgcaaattgcatctagtttcaa |
41192854 |
T |
|
| Q |
112 |
gacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41192853 |
gacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaag |
41192754 |
T |
|
| Q |
212 |
aatgaat |
218 |
Q |
| |
|
||||||| |
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|
| T |
41192753 |
aatgaat |
41192747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 41200120 - 41199994
Alignment:
| Q |
88 |
cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41200120 |
cctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattttgtcaaccttcctaccttttgttttgcagcaagg |
41200025 |
T |
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| Q |
188 |
cagtcccaaatactgataagaaagaatgaat |
218 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
41200024 |
cagtcccaaatactgataagaaagaatgaat |
41199994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 41407555 - 41407432
Alignment:
| Q |
88 |
cctgcaaattgcatctagtttcaagacaactaaat-gtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaag |
186 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| | |||| | |||| ||||||||| ||| ||| ||||||||||||||||| |
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| T |
41407555 |
cctgcaaattgcatctagttttaagacaactaaattgtccatat----taccgaga----taaaatctgtcaactttcatactttttgttttgcagcaag |
41407464 |
T |
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| Q |
187 |
gcagtcccaaatactgataagaaagaatgaat |
218 |
Q |
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||||| |||||||||||| ||||||||||||| |
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| T |
41407463 |
gcagttccaaatactgattagaaagaatgaat |
41407432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 41200208 - 41200157
Alignment:
| Q |
12 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaa |
63 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
41200208 |
attatcctaaaattgatgtcctttgaaaataagtaggtccttccacttccaa |
41200157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 41407641 - 41407590
Alignment:
| Q |
12 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaa |
63 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
41407641 |
attatcctaaaatggatgtcctttgaaaacatgtaggtccatccacttccaa |
41407590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 3379 - 3502
Alignment:
| Q |
88 |
cctgcaaattgcatctagtttcaagacaactaaat-gtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaag |
186 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| | |||| | |||| ||||||||| ||| ||| ||||||||||||||||| |
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|
| T |
3379 |
cctgcaaattgcatctagttttaagacaactaaattgtccatat----taccgaga----taaaatctgtcaactttcatactttttgttttgcagcaag |
3470 |
T |
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| Q |
187 |
gcagtcccaaatactgataagaaagaatgaat |
218 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |
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| T |
3471 |
gcagttccaaatactgattagaaagaatgaat |
3502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 3301 - 3342
Alignment:
| Q |
12 |
attattctaaaattgatgtcctttgaaaacaagtaggtccat |
53 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||||||||| |
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|
| T |
3301 |
attatcctaaaatggatgtcctttgaaaacatgtaggtccat |
3342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 23943 - 24066
Alignment:
| Q |
88 |
cctgcaaattgcatctagtttcaagacaactaaat-gtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaag |
186 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| | |||| | |||| ||||||||| ||| ||| ||||||||||||||||| |
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|
| T |
23943 |
cctgcaaattgcatctagttttaagacaactaaattgtccatat----taccgaga----taaaatctgtcaactttcatactttttgttttgcagcaag |
24034 |
T |
|
| Q |
187 |
gcagtcccaaatactgataagaaagaatgaat |
218 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |
|
|
| T |
24035 |
gcagttccaaatactgattagaaagaatgaat |
24066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 23857 - 23908
Alignment:
| Q |
12 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaa |
63 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23857 |
attatcctaaaatggatgtcctttgaaaacatgtaggtccatccacttccaa |
23908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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