View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20486_low_44 (Length: 210)

Name: NF20486_low_44
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20486_low_44
NF20486_low_44
[»] chr6 (1 HSPs)
chr6 (19-127)||(2991419-2991527)
[»] chr7 (3 HSPs)
chr7 (19-127)||(7627056-7627164)
chr7 (21-127)||(23279217-23279323)
chr7 (21-119)||(36708465-36708561)
[»] chr3 (2 HSPs)
chr3 (21-127)||(26303831-26303937)
chr3 (21-102)||(13613516-13613597)
[»] chr1 (1 HSPs)
chr1 (21-98)||(24288068-24288144)
[»] chr4 (1 HSPs)
chr4 (21-122)||(25979413-25979518)
[»] chr5 (2 HSPs)
chr5 (19-119)||(29170145-29170245)
chr5 (55-121)||(14097232-14097298)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 2991419 - 2991527
Alignment:
Q  19 aagagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgttctaagggtaggttaccggattg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2991419 aagagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgctctaagggtaggttaccggattg 2991518  T
Q  119 actcgtgaa 127  Q
    |||||||||    
T  2991519 actcgtgaa 2991527  T

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Target: chr7 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 7627164 - 7627056
Alignment:
Q  19 aagagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgttctaagggtaggttaccggattg 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7627164 aagagcctttcaccaaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgctctaagggtaggttaccggattg 7627065  T
Q  119 actcgtgaa 127  Q
    |||| ||||    
T  7627064 actcatgaa 7627056  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 23279323 - 23279217
Alignment:
Q  21 gagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgttctaagggtaggttaccggattgac 120  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||| |||| ||    
T  23279323 gagccctttaccaaagtggtgtctaaaaccaccaaaaagaatttgaagaagggtttgcaggttcataacacccgctctaagggtaggttacctgattaac 23279224  T
Q  121 tcgtgaa 127  Q
    || ||||    
T  23279223 tcatgaa 23279217  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 36708465 - 36708561
Alignment:
Q  21 gagcctttcaccgaagtggtgtctaaaac-caccaaaaagaatttgaagaaggtttttcatgttcataacacccgttctaagggtaggttaccggattga 119  Q
    ||||| ||||| ||||||||||||||||| ||| |||||||||||||||   | ||| | ||||||||||||| | ||||||||||||||||||||||||    
T  36708465 gagccattcacggaagtggtgtctaaaacacacaaaaaagaatttgaag---ggtttccgtgttcataacacctgctctaagggtaggttaccggattga 36708561  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 26303831 - 26303937
Alignment:
Q  21 gagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgttctaagggtaggttaccggattgac 120  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||    
T  26303831 gagcccttcaccaaagtggtgtctaaaaccaccaaaaagaatttgaagaagggttttctggttcataacacccgctctaagggtaggttaccggattgac 26303930  T
Q  121 tcgtgaa 127  Q
    || ||||    
T  26303931 tcatgaa 26303937  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 13613597 - 13613516
Alignment:
Q  21 gagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgttctaagg 102  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||    
T  13613597 gagcccttcaccaaagtggtgtctaaaaccaccaaaaagaatttgaagacgggttttcatgttcataacatccgctctaagg 13613516  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 24288144 - 24288068
Alignment:
Q  21 gagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgttct 98  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  24288144 gagcccttcaccgaagtggtgtctaaaactaccaaaaagaatttgaagaagg-gtttcatgttcataacacccgttct 24288068  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 25979413 - 25979518
Alignment:
Q  21 gagcctttcaccgaagtggtgtctaaaaccaccaaaaagaat---ttgaagaaggtttttcatgttcataac-acccgttctaagggtaggttaccggat 116  Q
    ||||| ||||| |||||||||||||||||||| ||||| ||    |||||||||| ||| | ||| |||||| ||||| |||||||||||||||||||||    
T  25979413 gagcccttcacggaagtggtgtctaaaaccacaaaaaaaaaaaaattgaagaagggtttccgtgtccataaccacccgctctaagggtaggttaccggat 25979512  T
Q  117 tgactc 122  Q
    ||||||    
T  25979513 tgactc 25979518  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 29170245 - 29170145
Alignment:
Q  19 aagagcctttcaccgaagtggtgtctaaaaccaccaaaaagaatttgaagaaggtttttcatgttcataacacccgttctaagggtaggttaccggattg 118  Q
    ||||||| ||||| ||||||||||||||  |||| ||||||||   | |||||| |||||| |||||||| || || ||||| || ||||||| ||||||    
T  29170245 aagagcccttcactgaagtggtgtctaaggccacgaaaaagaagaagcagaagggttttcaggttcataatactcgatctaaaggcaggttactggattg 29170146  T
Q  119 a 119  Q
    |    
T  29170145 a 29170145  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 14097298 - 14097232
Alignment:
Q  55 aaaagaatttgaagaaggtttttcatgttcataacacccgttctaagggtaggttaccggattgact 121  Q
    |||||||||||||||||| ||||||  |||| || ||  | ||||| ||||||||||||||||||||    
T  14097298 aaaagaatttgaagaagggttttcagattcacaatacatgctctaatggtaggttaccggattgact 14097232  T

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