View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_45 (Length: 202)
Name: NF20486_low_45
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 33541911 - 33541711
Alignment:
| Q |
1 |
cttgtttcaaagtaaatgtatccaaacacaaattattttacctttgactcaattttagacagaaaaatcaattcttatccccttagaaccaaagatacac |
100 |
Q |
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| T |
33541911 |
cttgtttcaaagtaaatgtatcgaaacgcaaattattttacctttgactcaattttagacccaaaaatcaattcttatcaccttagaaccaaagatacac |
33541812 |
T |
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| Q |
101 |
ttaattgtagagtaagannnnnnnnngttaattataatgtcttgaattatctgaatttgaaatttgctatgggtagtttgatattgttgtagttttaggg |
200 |
Q |
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| T |
33541811 |
ttaattgtagagtaaga-ttttttttgttaattataatgtcttgaattatctgaatttgaaatttgctatgggtagtttgatattgttgtagttttaggg |
33541713 |
T |
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| Q |
201 |
ga |
202 |
Q |
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| T |
33541712 |
ga |
33541711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 32736550 - 32736592
Alignment:
| Q |
15 |
aatgtatccaaacacaaattattttacctttgactcaatttta |
57 |
Q |
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| T |
32736550 |
aatgtattcaaatacaaattattttacctttgactcactttta |
32736592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 16972061 - 16971978
Alignment:
| Q |
15 |
aatgtatccaaacacaaattattttacctttgactcaattttagacagaaaaatcaattcttatccccttagaaccaaagatacact |
101 |
Q |
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| T |
16972061 |
aatgtattcaaacacaaatcattttaccttcaactcacttttagtctg---aatcaattcttgtcaccgtagaaccaaacatacact |
16971978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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