View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_7 (Length: 427)
Name: NF20486_low_7
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_7 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 168 - 411
Target Start/End: Complemental strand, 15116244 - 15116001
Alignment:
| Q |
168 |
tctgcaaaaaccaatgaacatgttccattatagctgcaaaaaccattatgattatgaaattatctctaacccaaacttttcaaaacatcttaacttaata |
267 |
Q |
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| T |
15116244 |
tctgcaaaaaccaatgaacgtgttccattatcgttgcaaaaaccattatgattatgaaattatctctaacccaaacttttcaaaacatcttaacttaata |
15116145 |
T |
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| Q |
268 |
attggttttcttcacaaaaaactcaccttattcctcaatccaaacaataatcagttttcattttccaaaattccaacatcaaaacaaaacaaccatggtg |
367 |
Q |
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| T |
15116144 |
atcggttttcttcgcaaaaaactcaccttattcctcaatccaaacaataatcagttttcattttccaaaattccaacatcaaaacaaaacaaccatggtg |
15116045 |
T |
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| Q |
368 |
ttcaaagaagcaggatcatctcatccgttcatctcttcattcat |
411 |
Q |
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| T |
15116044 |
ttcagagaagcaggttcatctcatcctttcatctcttcattcat |
15116001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 15116397 - 15116335
Alignment:
| Q |
20 |
atcttcaattgtgggttcaccatattattatcggtattccatacaagcagcagcaccaaagaa |
82 |
Q |
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| T |
15116397 |
atcttcaactgtgggttcaccatattattatcggtgttccatacaagaagcagcaccaaagaa |
15116335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 239 - 387
Target Start/End: Complemental strand, 9783643 - 9783503
Alignment:
| Q |
239 |
caaacttttcaaaacatcttaacttaataattggttttcttcacaaaaaa--ctcaccttattcctcaatccaaacaataatcagttttcattttccaaa |
336 |
Q |
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| T |
9783643 |
caaacttttcagaacagcttaacttcaaaatcgattttcttcacaaaaaaaactcacctcattcctcaatccaaacaataatcaattttcattttcc-aa |
9783545 |
T |
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| Q |
337 |
attccaacatcaaaacaaaacaaccatggtgttcaaagaagcaggatcatc |
387 |
Q |
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| T |
9783544 |
attc---------aacaaaacaaccatggtgttcaaagaagcaggttcatc |
9783503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 26616408 - 26616455
Alignment:
| Q |
31 |
tgggttcaccatattattatcggtattccatacaagcagcagcaccaa |
78 |
Q |
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| T |
26616408 |
tgggttcaccatattattatggctattctatgcaagcagcagcaccaa |
26616455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 32746 - 32688
Alignment:
| Q |
20 |
atcttcaattgtgggttcaccatattattatcggtattccatacaagcagcagcaccaa |
78 |
Q |
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| T |
32746 |
atcttcaactatgggttcaccatattattatgggtattctatgcaagcagcagcaccaa |
32688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 21724108 - 21724050
Alignment:
| Q |
20 |
atcttcaattgtgggttcaccatattattatcggtattccatacaagcagcagcaccaa |
78 |
Q |
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| T |
21724108 |
atcttcaactatgggttcaccatattattatgggtattctatgcaagcagcagcaccaa |
21724050 |
T |
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