View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20486_low_8 (Length: 418)
Name: NF20486_low_8
Description: NF20486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20486_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 186 - 374
Target Start/End: Original strand, 22787356 - 22787544
Alignment:
| Q |
186 |
aaattgtgaggaccccaatgacgaaaattgattagtggccaagaacttaacataacaacacaagtttagatacttgaattcatgaattattagagctaaa |
285 |
Q |
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| T |
22787356 |
aaattgtgaggaccccaatgacaaaaattgattagtggccaagaacttaacataacaacacaagtttagatacttgaattcattaattattagaactaaa |
22787455 |
T |
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| Q |
286 |
tttgatgtatattgtatctaaaaaagagttgtcttagatattatcaacctacgatatgtatctctataacacaattatgcaagatatat |
374 |
Q |
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| T |
22787456 |
tttgatgtttattgtatctaaaaaagagttgtcttaggtatcatcaacctacgatatgtatctctataacaaaattatgcaagatatat |
22787544 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 33632945 - 33632903
Alignment:
| Q |
45 |
attccccacgcctaactcgtctcctacactaatactagaaaga |
87 |
Q |
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| T |
33632945 |
attcccaacgcctaactcgtttcctaaactaatactagaaaga |
33632903 |
T |
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