View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_high_10 (Length: 327)
Name: NF20487_high_10
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 5059012 - 5059313
Alignment:
| Q |
11 |
catcatcagatcgcgactcaattgatgaacaccaggaacatcactcaagagtaatcaaagctcttcctcataatccaaaatcagcaagtgagtcagcagc |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5059012 |
catcaccagatcgcgactcaattgatgaacaccaggaacatcactcaagagtaatcaaagctcttcctcataatccaaaatcagcaagtgagtcagcagc |
5059111 |
T |
|
| Q |
111 |
caagatattcaaatcaatacaagaagaaaggaaatttttgtgacaagnnnnnnnncttcataatatgtctaataaagcaagatattctaatatgacacta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5059112 |
caagatattcaaatcaatacaagaagaaaggaaatttttgtgacaag-tttttttcttcataatatgtctaataaagcaagatattctaatatgacacta |
5059210 |
T |
|
| Q |
211 |
taccctgacactaacaatgtatctatatactgtc-nnnnnnntgtatatc--tagattgataacaatacttaaggcttttggagaaatatgaagtatact |
307 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5059211 |
taccctgacactaacaatgtatctatatactgtcaaaaaaaatgtatatctatagattgataacaatacttaaggcttttggagaaatatgaagtatact |
5059310 |
T |
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| Q |
308 |
tgg |
310 |
Q |
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||| |
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| T |
5059311 |
tgg |
5059313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 5198334 - 5198442
Alignment:
| Q |
46 |
gaacatcactcaagagtaatcaaagctcttcctcataatccaaaatcagcaagtgagtcagcagccaagatattcaaatcaatacaagaagaaaggaaat |
145 |
Q |
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||||| |||| ||| | |||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||| |
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| T |
5198334 |
gaacaacacttaagtgaaatcaaaggtcttcctcataatccaaaatcagcaagtgagacatcaaccaagatattcaagtcaatacaagaagaaaggaaac |
5198433 |
T |
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| Q |
146 |
ttttgtgac |
154 |
Q |
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||||||||| |
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| T |
5198434 |
ttttgtgac |
5198442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 5178276 - 5178203
Alignment:
| Q |
62 |
taatcaaagctcttcctcataatccaaaatcagcaagtgagtcagcagccaagatattcaaatcaatacaagaa |
135 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||| |
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| T |
5178276 |
taatcaaaggtctttctcataatccaaaatcagcaagtgagtcatcaaccaagatattcaagtcaagacaagaa |
5178203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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