View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_high_12 (Length: 315)
Name: NF20487_high_12
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 3550314 - 3550029
Alignment:
| Q |
12 |
ataatacttgttagaacagaaaatccggctcttaagaaaacgtatttataaacacaaacaaaaagtgcggttgtgcctacatctccgataatacttgtta |
111 |
Q |
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| T |
3550314 |
ataatacttgttagaacagaaaatccggctcttaagaaaacgtattaataaacacaaacaaaaagtgtggttgtgcctacatctccgataatacttgtta |
3550215 |
T |
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| Q |
112 |
tattaatagtatgattttattttaagaattgccaaaagtttatgcaacattgtaattgaagagatcaagatgcatacaggaaatattcttaccccgttga |
211 |
Q |
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| T |
3550214 |
tattaatagtatgattttattttgagaattgccaaaagtttatgcaacattgtaattgaagagatcaagatgcgtgcaggaaatattcttaccccgttga |
3550115 |
T |
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| Q |
212 |
attggattttgcttatatccaatgaagattgtggaagtccgggaaaccgatgtttcaagagaagtaagatggtttctgctctctct |
297 |
Q |
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| T |
3550114 |
attggattttgcttatatccaatgaagattgtggaagtccaggaaaccgatgtttcaagagaagtaagatggtttctgctctctct |
3550029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 43811280 - 43811380
Alignment:
| Q |
197 |
ttcttaccccgttgaattggattttgcttatatccaatgaagattgtggaagtccgggaaaccgatgtttcaagagaagtaagatggtttctgctctctc |
296 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||| || || || || || || | ||||||||||||||||| |||||||| |
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| T |
43811280 |
ttcttaccctgttgaattggattttgcttatatccaatgaagattgaggaatgccagggaatcggtgctttattagaagtaagatggtttccgctctctc |
43811379 |
T |
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| Q |
297 |
t |
297 |
Q |
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| T |
43811380 |
t |
43811380 |
T |
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