View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_high_19 (Length: 227)
Name: NF20487_high_19
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 4858156 - 4858001
Alignment:
| Q |
4 |
tggcttaaaccgaggatttgtgcccaaaacattaaaaaac--caacctaacagcaggtgtgattgtgattttttattgctactcgattatgtttccttaa |
101 |
Q |
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| T |
4858156 |
tggcttaaaccgaggattcgtgcccaaaacattaaaaaaaatcaacctaacagcaggta--attgtgattttttattgctactcgattatgtttccttaa |
4858059 |
T |
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| Q |
102 |
attccaattttgttgatagttgatacttacagtacatcttgaaaaataagtagataaa |
159 |
Q |
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| T |
4858058 |
attccaatttcgttgatagttgatacttaaattacatctttaaaaataagtagataaa |
4858001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 5176386 - 5176506
Alignment:
| Q |
85 |
cgattatgtttccttaaattccaattttgttgatagttgatacttacagtacatcttgaaaaataagtagataaaatattgtttcaaacaagaagagatt |
184 |
Q |
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| T |
5176386 |
cgattatgtttccttaaattccgattttgttgatattttatacttaaattacatcttaaaaaataagcagataaaactctgtttcaaac---aagagatt |
5176482 |
T |
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| Q |
185 |
gatattctcaatccactaggaaca |
208 |
Q |
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| T |
5176483 |
gctattctcattccattaagaaca |
5176506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5133348 - 5133262
Alignment:
| Q |
1 |
tattggcttaaaccgaggatttgtgcccaaaacattaaaaaaccaacctaacagcaggtgtgattgtgattttttattgctactcgatt |
89 |
Q |
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| T |
5133348 |
tattggcttgtaccgaggatttgtgcccaatgctttaaaaaacctaccaaacagcag--gtacttgtgatcttttatttctactcgatt |
5133262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5176343 - 5176383
Alignment:
| Q |
1 |
tattggcttaaaccgaggatttgtgcccaaaacattaaaaa |
41 |
Q |
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| T |
5176343 |
tattggcttaaaccgaggattcatgcccaaaacattaaaaa |
5176383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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