View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_high_3 (Length: 449)
Name: NF20487_high_3
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 36938527 - 36938967
Alignment:
| Q |
1 |
tttaagtgtcaccttcacaggttatggagataacaacacaatccaacagaatttgtttcaaattgtcaatctaagagaagtcctacctgattgggttgaa |
100 |
Q |
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| T |
36938527 |
tttaagtgtcaccttcacaggttatggagataacaacacaatccaacagaatttgtttcaaattgtcaatctaagagaagtcctacctgattgggttgaa |
36938626 |
T |
|
| Q |
101 |
tttggcttcacttcagcaacagggttgttttggggggaggaacatactcttaggtcatggtccttcaactctagtttagattttgaagcacacaaagacg |
200 |
Q |
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| T |
36938627 |
tttggcttcacttcagcaacagggttgttttggggggaggaacatactcttaggtcatggtccttcaactctagtttagattttgaagcacacaaagacg |
36938726 |
T |
|
| Q |
201 |
aaggaaaaacaggacttgttatgggactagcagtgggattaggaattggtggatttgttttgattggtgtattgggtcttttttccattgtgttgtggaa |
300 |
Q |
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| T |
36938727 |
aaggaaaaacaggacttgttatgggactagcagtgggattaggaattggtggatttgttttgattggtgtattgggtcttttttccattgtgttgtggaa |
36938826 |
T |
|
| Q |
301 |
gaagtggaagaaagaaagtgaagaggaagatggtgaatttgaagagtacatgggagaggattttggaaggggggcaggacctaggaagtattcatatgca |
400 |
Q |
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| T |
36938827 |
gaagtggaagaaagaaagtgaagaggaagatggtgaatttgaagagtacatgggagaggattttggaaggggggcaggacctaggaagtatacatatgca |
36938926 |
T |
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| Q |
401 |
gaattagcacacgcagctaatgatttcaaagacgagtataa |
441 |
Q |
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| T |
36938927 |
gaattagcacacgcagctaatgatttcaaagacgagtataa |
36938967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36948771 - 36948995
Alignment:
| Q |
1 |
tttaagtgtcaccttcacaggttatggagataacaacacaatccaacagaatttgtttcaaattgtcaatctaagagaagtcctacctgattgggttgaa |
100 |
Q |
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| T |
36948771 |
tttaactgtcacattcacaggttaccaagataacaaaacaatccaacagcacctgttttatgttgttaatctacgagatgttctaccggattgggttgaa |
36948870 |
T |
|
| Q |
101 |
tttggcttcacttcagcaacagggttgttttggggggaggaacatactcttaggtcatggtccttcaactctagtttagattttgaagcacacaaagacg |
200 |
Q |
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| T |
36948871 |
tttggattcacttctgcaacaggatttttct---gggagtatcatactcttaactcatggtcattcaactcaagtctagattttgaagcaaaaaaagatg |
36948967 |
T |
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| Q |
201 |
aaggaaaaacaggacttgttatgggact |
228 |
Q |
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| T |
36948968 |
gaacaaaaacaggacttgttataggact |
36948995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 441
Target Start/End: Complemental strand, 36942268 - 36942151
Alignment:
| Q |
324 |
aggaagatggtgaatttgaagagtacatgggagaggattttggaaggggggcaggacctaggaagtattcatatgcagaattagcacacgcagctaatga |
423 |
Q |
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||||||||||||||||| ||||||||||||| || ||||| ||||| ||| ||||||| | ||||||| ||||||||||||||||| | ||||||||| | |
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| T |
36942268 |
aggaagatggtgaatttcaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaatgcagctaataa |
36942169 |
T |
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| Q |
424 |
tttcaaagacgagtataa |
441 |
Q |
| |
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||||||||| ||| |||| |
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| T |
36942168 |
tttcaaagatgagcataa |
36942151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 36958990 - 36959129
Alignment:
| Q |
86 |
cctgattgggttgaatttggcttcacttcagcaacagggttgttttggggggaggaacatactcttaggtcatggtccttcaactctagtttagattttg |
185 |
Q |
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| T |
36958990 |
cctgattgggttgaatttggattcacttcagcaacaggaactttttggg---agtatcatactcttagctcatggtcattcaactcaagtttagattttg |
36959086 |
T |
|
| Q |
186 |
aagcacacaaagacgaaggaaaaacaggacttgttatgggact |
228 |
Q |
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| T |
36959087 |
aagcaaaagaagatggaacaaaaacaggactagttataggact |
36959129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 36942359 - 36942306
Alignment:
| Q |
224 |
ggactagcagtgggattaggaattggtggatttgttttgattggtgtattgggt |
277 |
Q |
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| T |
36942359 |
ggactagcagtgggattgggaaccggtggatttgttctcattggtgtatttggt |
36942306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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