View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20487_high_6 (Length: 388)
Name: NF20487_high_6
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_high_6 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 228288 - 228649
Alignment:
| Q |
13 |
aatatgcacttataccaacaataaaatgaatttgtacccnnnnnnnnnt----gaaccatgcaatggccaatttcaagttcaaaatcatttctaaggttc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
228288 |
aatatgcacttataccaacaataaaatgaatttgtacccaaaaaaaaaaaaaagaaccatgcaatggccaatttcaagttcaaaatcatctctaaggttc |
228387 |
T |
|
| Q |
109 |
ttgcagatagattagccaaaatcatgcctcaaattgtttcaactgagcagaggggtttaatacaaggaagtaacattaaggattgcatctgcttagcatc |
208 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
228388 |
ttggagatagattagccaaaatcatgcctgaaattgtttcaactgagcagaggggtttaatacaaggaagtaacattaaggattgcatctgtttagcatc |
228487 |
T |
|
| Q |
209 |
agaagctgcaaatcttcttcataagaaagcatttgggggaacctggctttaaagattaatatctctaaagcatttgatacccttgattggagctttcttc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228488 |
agaagctgcaaatcttcttcataagaaagcatttgggggaacctggctttaaagattgatatctctaaagcatttgatacccttgattggagctttcttc |
228587 |
T |
|
| Q |
309 |
tttcagttctcaagtgttttggttttaatgaaattttttgcaaatggatagaggtgattctt |
370 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228588 |
tttcagttctcaagtgtcttggttttaatgaaattttttgcaaatggatagaggtgattctt |
228649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 28337486 - 28337449
Alignment:
| Q |
320 |
aagtgttttggttttaatgaaattttttgcaaatggat |
357 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28337486 |
aagtgttttggttttaatgatattttttgcaaatggat |
28337449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 17630334 - 17630282
Alignment:
| Q |
72 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
124 |
Q |
| |
|
||||| ||||| || |||||||||||||||||| || | |||||||||||||| |
|
|
| T |
17630334 |
atggcaaattttaaattcaaaatcatttctaagattttagcagatagattagc |
17630282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 14142026 - 14141968
Alignment:
| Q |
72 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagccaaaat |
130 |
Q |
| |
|
|||||||||||||||||||| || || |||||| || |||| ||||| ||||||||||| |
|
|
| T |
14142026 |
atggccaatttcaagttcaagattatatctaagattattgctgataggttagccaaaat |
14141968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 28358 - 28414
Alignment:
| Q |
68 |
tgcaatggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
124 |
Q |
| |
|
||||||||||||||||||||| |||||| | || ||| | |||||||| |||||||| |
|
|
| T |
28358 |
tgcaatggccaatttcaagtttaaaatcttgtccaagatccttgcagacagattagc |
28414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 32019953 - 32020005
Alignment:
| Q |
72 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
124 |
Q |
| |
|
||||| ||||| || |||||||||||||||||| || | |||||||||||||| |
|
|
| T |
32019953 |
atggcaaattttaaattcaaaatcatttctaagattttagcagatagattagc |
32020005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University