View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_1 (Length: 555)
Name: NF20487_low_1
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_1 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Original strand, 38389874 - 38390424
Alignment:
| Q |
16 |
aaagttacaagatatagtaaaatgaattgcgcat-------atgtattctcttgatacgcatcctttgatcgattccgtatttattggttgccaaggcag |
108 |
Q |
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| T |
38389874 |
aaagttagaagatatagtaaaatgaattgcgcttcatgagtatgtattctcttgatacgtatcttttgatcgattccatatttattggttgccaaggcag |
38389973 |
T |
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| Q |
109 |
ctggctggttttagatttttcttactagc--------aagttcaacaggaaggctgcttatcccaacatcagtcagttgaaattgcatcgcaaactctc- |
199 |
Q |
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| T |
38389974 |
ctgggtggttttagatttttcttactagctaggtagcaagtttaacaggaaggct---tatcccaacatcagtgagttgaaattgcatcgcaaactctct |
38390070 |
T |
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| Q |
200 |
aggtgtcataaacatataaggtttctcatttaccgctcaatattgctccaatatcttttattaatgtgagttactaaaccacatattaataaccaacaat |
299 |
Q |
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| T |
38390071 |
aggtgtcaaaaacatataaggtttttcatttaccgctcaatattgctcctg-atcttttattaatgtgagttacaataccacatattaataaccaaaaat |
38390169 |
T |
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| Q |
300 |
gaaactattaaaactcattatcttctaatcgtgtaaaaagaagatcataacgttgtacttactttcacagcttttctctcgaggcatacaaaacccattg |
399 |
Q |
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| T |
38390170 |
gaaactattaaaactcattatcttctaatcatgtaaaaagaagatcataacgttatacttactttcacagcttttctctcgaggcatacaaaacccattg |
38390269 |
T |
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| Q |
400 |
aagcnnnnnnnnccaagcacatgctcacacggacgccgggtacacaatatgtccctcgaagagtatgtgtcctttaaatcttgatgtgcttctatcgcat |
499 |
Q |
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| T |
38390270 |
aagc-aaaaaaaccaagcacatgcttacacggacgccgggtacacaatatgtccctcgaagagtatgtgtcctttaaatcttgatgtgcttctatcgcat |
38390368 |
T |
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| Q |
500 |
tccacacagttatgactcttcaatctgcatatcttgttcttgttgatgccctaccc |
555 |
Q |
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| T |
38390369 |
tgcacacagttatgactcttcaatctgcatatcttgttcttgttgatgccctaccc |
38390424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 413 - 508
Target Start/End: Original strand, 38390784 - 38390878
Alignment:
| Q |
413 |
caagcacatgctcacacggacgccgggtacacaatatgtccctcgaagagtatgtgtcctttaaatcttgatgtgcttctatcgcattccacacag |
508 |
Q |
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| T |
38390784 |
caagcacatgctcacatgaac-cctagtacacaatatgtccctcagagagtatgtttcctttaaagcatgatgtgcttctattgcattgcacacag |
38390878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 327
Target Start/End: Complemental strand, 38391030 - 38390918
Alignment:
| Q |
214 |
tataaggtttctcatttaccgctcaatattgctccaatatcttttattaatgtgagttactaaaccacatattaataaccaacaatgaaactattaaaac |
313 |
Q |
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| T |
38391030 |
tataaggtttttcattttccgcccaatattgttcctg-atctttcattgatttgacctacaataccacataataataacaaaaaattaaactattaaaac |
38390932 |
T |
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| Q |
314 |
tcattatcttctaa |
327 |
Q |
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| T |
38390931 |
tcattatgttctaa |
38390918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 38389597 - 38389554
Alignment:
| Q |
284 |
attaataaccaacaatgaaactattaaaactcattatcttctaa |
327 |
Q |
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| T |
38389597 |
attaataaccaaaaattaaactattaaaactcattatattctaa |
38389554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 38389497 - 38389459
Alignment:
| Q |
365 |
cacagcttttctctcgaggcatacaaaacccattgaagc |
403 |
Q |
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| T |
38389497 |
cacaacttttctctcaaggcatacaaaacccattgaagc |
38389459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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