View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_10 (Length: 330)
Name: NF20487_low_10
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 35774983 - 35774682
Alignment:
| Q |
19 |
aagcagacctgatatgcttccatggaatgatcagcagcctcttttcgttcatcaccgttcttaaattccgccaaataccgataataatcccctttcattt |
118 |
Q |
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| T |
35774983 |
aagcagacctgatatgcttccatggaatgatcagcagcctcttttcgttcatcaccgttcttaaattccgccaaataccgataataatcccctttcattt |
35774884 |
T |
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| Q |
119 |
tatagaaaaagacactagattcaccagcagaggacgacggaataagatgatcatcaataatagacatgatatcgctgcatatattggataattcagattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35774883 |
tatagaaaaagacactagattcaccagcagaggacgacggaataagatgatcatcaataatagacatgatatcgctgcatatattggataattcagattc |
35774784 |
T |
|
| Q |
219 |
caccttgtgtctatactcctttatcctcttcacattcacatcattccctttagattcttccttatgctcaattgaggatagaatcctccatgaagcccta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35774783 |
caccttgtgtctatactcctttatcctcttcacattcacatcataccctttagattcttccttatgctcaattgaggatagaatcctccatgaagcccta |
35774684 |
T |
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| Q |
319 |
tg |
320 |
Q |
| |
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|| |
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| T |
35774683 |
tg |
35774682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 32199886 - 32199789
Alignment:
| Q |
217 |
tccaccttgtgtctatactcctttatcctcttcacattcacatcattccctttagattcttccttatgctcaattgaggatagaatcctccatgaagc |
314 |
Q |
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| T |
32199886 |
tccaccttctgcctatactccttaatacgcttaacattcaattcattcccttttgattcttctttctgctcaattgatgataagatcctccatgaagc |
32199789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 4802789 - 4802700
Alignment:
| Q |
25 |
acctgatatgcttccatggaatgatcagcagcctcttttcgttcatcaccgttcttaaattccgccaaataccgataataatcccctttc |
114 |
Q |
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||||||||||||| || ||| ||||||||||||||||| | |||||||| ||||||| || |||| ||| ||||||||||| |||||| |
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| T |
4802789 |
acctgatatgctttcaaggactgatcagcagcctctttcctctcatcaccactcttaaactcagccagataacgataataatcgcctttc |
4802700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 39359848 - 39359945
Alignment:
| Q |
211 |
tcagattccaccttgtgtctatactcctttatcctcttcacattcacatcattccctttagattcttccttatgctcaattgaggatagaatcctcca |
308 |
Q |
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|||| ||| ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||| |||||||| |||||||| || || ||||||||||| |
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| T |
39359848 |
tcagtttcaaccttgttcctatactccttaatccgtttcgcattcacatcatttcctttagtctcttccttttgctcaatggaagaaagaatcctcca |
39359945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 32200137 - 32200105
Alignment:
| Q |
82 |
aattccgccaaataccgataataatcccctttc |
114 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
32200137 |
aattccgccaaataccgataataatcacctttc |
32200105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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