View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_12 (Length: 315)
Name: NF20487_low_12
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_12 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 47299606 - 47299292
Alignment:
| Q |
1 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47299606 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacgatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatgg |
47299507 |
T |
|
| Q |
101 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
200 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299506 |
ctcgaggagcatatcgaccttccattcaacctgtgtggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
47299407 |
T |
|
| Q |
201 |
acaaattctttcgccaaataccattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctc |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299406 |
acaaattctttcgccaaatacaattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctc |
47299307 |
T |
|
| Q |
301 |
ttggttccatttcac |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
47299306 |
ttggttccatttcac |
47299292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 47292999 - 47292685
Alignment:
| Q |
1 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292999 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacattgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
47292900 |
T |
|
| Q |
101 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
47292899 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccatcttgaatacaa |
47292800 |
T |
|
| Q |
201 |
acaaattctttcgccaaataccattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctc |
300 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
47292799 |
acaaattttttcgccaaataccattaaggaagaagatactgcttctctagttcatcgatctttcttctttagagcttctgacatagctgcgcttcgtctc |
47292700 |
T |
|
| Q |
301 |
ttggttccatttcac |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
47292699 |
ttggttccatttcac |
47292685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 47242338 - 47242609
Alignment:
| Q |
1 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47242338 |
cgtctcaagtgtggtggtttcatattggccttgagtgtgaaccatacaatgggtgatgcagctggtttgagacaattcatgattgcatgggcagaaatgg |
47242437 |
T |
|
| Q |
101 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
200 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
47242438 |
ctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacatgcaaccatcgtgaatacga |
47242537 |
T |
|
| Q |
201 |
acaaattctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttctt |
269 |
Q |
| |
|
|||||| |||||||||||||| ||| || ||| |||||||| || |||||||||||||||||||||| |
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|
| T |
47242538 |
acaaatactttcgccaaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttctt |
47242609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 47256466 - 47256737
Alignment:
| Q |
1 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||| || |||||||||||||||||||| | ||||||| ||||||||| || |||||||||||||||| | |
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| T |
47256466 |
cgtctcaagtgtggtggtttcatattggccttgagtttgaaccatacaatgggtgatggatctggtttaagacaattcgtgtctgcatgggcagaaatag |
47256565 |
T |
|
| Q |
101 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
200 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| || |
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| T |
47256566 |
ctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccatcgtgaatatga |
47256665 |
T |
|
| Q |
201 |
acaaattctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttctt |
269 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||||| |||||||| || | |||||||||||||||||||||| |
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| T |
47256666 |
acaaatacttccgccaaatacgtacatcaaggaagaagatactactattgtagtccatcaatctttcttctt |
47256737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 39 - 315
Target Start/End: Original strand, 47267287 - 47267563
Alignment:
| Q |
39 |
gaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatggctcgaggagcacatcgaccttccattcaacctgtatgg |
138 |
Q |
| |
|
||||||||||||| | |||| ||||||||||| || ||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
47267287 |
gaaccatacaatgagcgatggagctggtttgaaactatttatgaatgcctgggcagaaatggctcgaggagcacataaaccttccattcaacctgtatgg |
47267386 |
T |
|
| Q |
139 |
aatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagata |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||| ||||||| || |||||| |||||| |
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|
| T |
47267387 |
aatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtcaaatacaatcaaggaagaagata |
47267486 |
T |
|
| Q |
239 |
ctgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcac |
315 |
Q |
| |
|
| | | ||||| |||||||||||||||||||| |||| ||||| | |||||||||||||||||||||||| |
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|
| T |
47267487 |
ccacaaccctagttcatcaatctttcttctttaggacttcagacattgttgtgcttcgtctcttggttccatttcac |
47267563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 47283211 - 47283528
Alignment:
| Q |
1 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
100 |
Q |
| |
|
||||||||||| ||||| ||||| |||| | | || ||||||||| |||| || |||||| | ||||||| ||||||||||| || ||||||||||||| |
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|
| T |
47283211 |
cgtctcaagtgcggtggtttcattgtgggcgtaaactggaaccatgcaattggcgatgcaacaggtttgaaacaattcatgaatgtctgggcagaaatgg |
47283310 |
T |
|
| Q |
101 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| || ||||| |||||||| |||||||||||||||||||| ||||||||| |||||| || |
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|
| T |
47283311 |
ctcgaggagcacatcaaccttccattcaaccagtatggcgcagagagatcctaatggctagagaccctccacgcattacttgcaaccatcgtgaatatga |
47283410 |
T |
|
| Q |
201 |
acaaattctttcgccaaataccattaaggaaaaagatactgcttct---ctagtccatcaatctttcttctttagagcttctgacatagccacacttcgt |
297 |
Q |
| |
|
|||||| ||| || |||||| || |||||| ||||| ||||| || |||||||||||||||||||||||| | |||| ||||||| || | ||| |
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| T |
47283411 |
acaaatacttacgtcaaatatcaacaaggaagaagatgctgctactaccatagtccatcaatctttcttctttacactttctcacatagctgcaatccgt |
47283510 |
T |
|
| Q |
298 |
ctcttggttccatttcac |
315 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
47283511 |
cacttgattccatttcac |
47283528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 47278618 - 47278891
Alignment:
| Q |
1 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
100 |
Q |
| |
|
|||||||||| ||||| || || |||| | | |||||||| ||| |||| | |||||| | ||||||| |||||| |||| || ||||||||||||| |
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|
| T |
47278618 |
cgtctcaagtacggtggttttattgtgggcgtaaattggaatcatgcaattgccgatgcaacaggtttgaaacaatttatgaatgtttgggcagaaatgg |
47278717 |
T |
|
| Q |
101 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| || ||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||| |
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|
| T |
47278718 |
ctcgaggagcacatcaaccttccattcaaccggtatggcgcagagagatcctaatggcaagagaccctccacgtgttacttgcaaccatcatgaatacga |
47278817 |
T |
|
| Q |
201 |
acaaattctttcgccaaataccattaaggaaaaaga---tactgcttctctagtccatcaatctttcttcttta |
271 |
Q |
| |
|
|||||| |||||| |||||| || |||||| |||| | ||||| | |||||||||| ||||||||||||| |
|
|
| T |
47278818 |
acaaatactttcgtcaaatatcaacaaggaagaagatgttgctgctaccatagtccatcactctttcttcttta |
47278891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 32731009 - 32731280
Alignment:
| Q |
1 |
cgtctcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32731009 |
cgtctcaagtgtggtggtttcatattggccttgagtgtgaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatgg |
32731108 |
T |
|
| Q |
101 |
ctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacga |
200 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |
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| T |
32731109 |
ctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatgtattacatgcaaccatcgtgaatacga |
32731208 |
T |
|
| Q |
201 |
acaaattctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttctt |
269 |
Q |
| |
|
|||||| |||||||||||||| ||| || ||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
32731209 |
acaaatactttcgccaaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttctt |
32731280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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