View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_17 (Length: 274)
Name: NF20487_low_17
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 30033698 - 30033956
Alignment:
| Q |
1 |
aattctttactggtataataattatgcatgttttacgttgaataaataactatgcatgttgagcttgtttgctttcgcatttgatcttgttaaatatatt |
100 |
Q |
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| T |
30033698 |
aattctttactggtataataattatgcatgttttacgttgaataaataactatgcatgttgagcttgtttgctttcgcatttgatcttgttaaatatatt |
30033797 |
T |
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| Q |
101 |
aacgtgttttgggtgacaaatcacacgttacaaaatcttttgagtgatccttatggaagaaactgctgtggagatgaagaaaaaacgtgtttgtttgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30033798 |
aacgtgttttgggtgacaaatcacacgttacaaaatcttttgagtgatccttatggaagaaactgctgtggagatgaagaaaaaacgtgtttgtttgtgg |
30033897 |
T |
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| Q |
201 |
tg---agtggcgttggcatggtctacttcaacttcaagcaaccaaagtagtataatact |
256 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30033898 |
tgagtagtggcgttggcatgacctacttcaacttcaagcaaccaaagtagtataatact |
30033956 |
T |
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