View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20487_low_18 (Length: 270)

Name: NF20487_low_18
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20487_low_18
NF20487_low_18
[»] chr1 (18 HSPs)
chr1 (9-270)||(9300371-9300632)
chr1 (10-224)||(9466349-9466563)
chr1 (9-224)||(8962581-8962796)
chr1 (10-224)||(8939655-8939869)
chr1 (11-224)||(9242155-9242368)
chr1 (9-224)||(9257120-9257339)
chr1 (9-224)||(8927228-8927446)
chr1 (9-224)||(9364674-9364889)
chr1 (9-123)||(9337815-9337929)
chr1 (13-123)||(9085923-9086033)
chr1 (13-123)||(9236124-9236234)
chr1 (13-123)||(9069627-9069737)
chr1 (16-116)||(9495562-9495662)
chr1 (13-123)||(9125095-9125205)
chr1 (16-123)||(9378002-9378109)
chr1 (13-123)||(8861517-8861627)
chr1 (13-123)||(8978917-8979027)
chr1 (10-116)||(9437492-9437598)
[»] chr3 (1 HSPs)
chr3 (9-221)||(9171780-9171992)
[»] scaffold0690 (1 HSPs)
scaffold0690 (9-134)||(1883-2008)
[»] chr6 (1 HSPs)
chr6 (9-123)||(15910109-15910223)
[»] chr4 (1 HSPs)
chr4 (34-119)||(27696335-27696420)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 9300371 - 9300632
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300371 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 9300470  T
Q  109 gggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300471 gggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaa 9300570  T
Q  209 tccctatagatgaagaacaggatgatttcagaattgcnnnnnnnntggcaattgtgggatta 270  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  9300571 tccctatagatgaagaacaggatgatttcagaattgcaaaaaaaatggcaattgtgggatta 9300632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 9466563 - 9466349
Alignment:
Q  10 ttaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttg 109  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  9466563 ttaggctacatggcacccgaagttttttctagaaacttcgggaatgtctcatataagtctgatatatatagttatggtatgttgttgttggagatggttg 9466464  T
Q  110 ggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaat 209  Q
      ||||| |||||| | |||||||||||| |||||| || |  ||||||| ||||||||||||||||||||  |||  ||||||| ||||||||||||||    
T  9466463 caggaagaaagaatacaaacacaaccacaggtgaagaaaatttacaagttctatatccagattggatccacgatttgcttgaagggggagacatacaaat 9466364  T
Q  210 ccctatagatgaaga 224  Q
    |||||| || |||||    
T  9466363 ccctattgacgaaga 9466349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 8962581 - 8962796
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||||| || ||||| |||||| |||||||||||||     
T  8962581 attaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtc 8962680  T
Q  109 gggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaa 208  Q
    || ||||| |||||| | || |||  ||||  ||||| || |   |||||||| |||||||||||||||||| ||||  ||||||| ||||| ||||| |    
T  8962681 ggaggaagaaagaatactaagacagtcacagatgaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggagatatacata 8962780  T
Q  209 tccctatagatgaaga 224  Q
    ||||||| ||||||||    
T  8962781 tccctattgatgaaga 8962796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 8939655 - 8939869
Alignment:
Q  10 ttaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttg 109  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || || || |||||| |||||||||||||||    
T  8939655 ttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagtctgatatatacagctacggtatgttgctgctggagatggttg 8939754  T
Q  110 ggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaat 209  Q
    | ||||| |||||| | || |||  |||| |||||| || |   ||||| || |||||||||||||||||  ||||| ||||||| |||||| || | ||    
T  8939755 gaggaagaaagaatactaagacagtcacaggtgaagaaaattttcaagtattgtatccagattggatccatggtttatttgaaggtggagacgtatatat 8939854  T
Q  210 ccctatagatgaaga 224  Q
    ||| || ||||||||    
T  8939855 cccaattgatgaaga 8939869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 9242368 - 9242155
Alignment:
Q  11 taggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgg 110  Q
    |||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| || ||||| ||| |||||||||||||    
T  9242368 taggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatgtatacagttacggtatgttattgttggagatggttgg 9242269  T
Q  111 gggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaatc 210  Q
     ||||| |||||| | || |||||     |||||| || |  |||| ||   |||||||| |||||||||| |||  ||||||||||||| |||||||||    
T  9242268 aggaagaaagaatacaaaaacaacaggtggtgaagaaaatatacaaattgagtatccagactggatccacaatttgcttgaaggaggagatatacaaatc 9242169  T
Q  211 cctatagatgaaga 224  Q
    ||||| ||||||||    
T  9242168 cctattgatgaaga 9242155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 9257339 - 9257120
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctc----ttataagtccgatatatatagttatggcatgttgttgctggagat 104  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||| ||||||||||| ||||| || ||| |  |||| ||    
T  9257339 attaggatacatggcacccgaagttttttctagaaactttggtaatgtctcttaattataagtctgatatatatagctatggtatattgctattggaaat 9257240  T
Q  105 ggttgggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacata 204  Q
     ||||| ||||| |||||| | ||  ||||||||| ||||| ||     |||||| |||||||||||||||||||| ||||  || |||||| ||| |||    
T  9257239 tgttggaggaagaaagaatacaaatccaaccacaaatgaagaaaactttcaagttctatatccagattggatccacggtttgcttaaaggagaagaaata 9257140  T
Q  205 caaatccctatagatgaaga 224  Q
    || ||| |||||||||||||    
T  9257139 catatcgctatagatgaaga 9257120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 8927228 - 8927446
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || || || ||||||||||| |||||||||    
T  8927228 attaggttacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagtctgatatatacagctacggtatgttgttgctagagatggtt 8927327  T
Q  109 gggggaaggaagaattcgaacacaaccacaagt---gaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatac 205  Q
    || ||||| |||||| | || ||||| ||  ||   |||| || |   |||||| | |||||||||||||||||  ||||| ||||||| |||||| ||     
T  8927328 ggaggaagaaagaatactaaaacaactactggtggcgaagaaaatttccaagttctgtatccagattggatccatggtttacttgaaggtggagacgtat 8927427  T
Q  206 aaatccctatagatgaaga 224  Q
    | ||||| || ||||||||    
T  8927428 atatcccaattgatgaaga 8927446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 9364674 - 9364889
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || ||||| ||| |||| ||||||    
T  9364674 attaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagttacggtatgttattgttggaaatggtt 9364773  T
Q  109 gggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaa 208  Q
    || ||||| |||||| | || ||||  |   | |||| || |  |||||||   |||||||| |||||||||| |||  ||||||||||||| ||||| |    
T  9364774 ggaggaagaaagaatacaaaaacaattagtggcgaagaaaatatacaagttgagtatccagactggatccacaatttgcttgaaggaggagatatacata 9364873  T
Q  209 tccctatagatgaaga 224  Q
    ||||||| ||||||||    
T  9364874 tccctattgatgaaga 9364889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 9337815 - 9337929
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || ||||| ||| |||| ||||||    
T  9337815 attaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagttacggtatgttattgttggaaatggtt 9337914  T
Q  109 gggggaaggaagaat 123  Q
    || ||||| ||||||    
T  9337915 ggaggaagaaagaat 9337929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 9086033 - 9085923
Alignment:
Q  13 ggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggg 112  Q
    ||||| ||||| || |||||||| ||  |||| ||||||||||| |||  |||||| ||||| ||||||||||| ||||||||||| ||||||||||| |    
T  9086033 ggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagtctgatatttatagttatgggatgttgttgctagagatggttggtg 9085934  T
Q  113 gaaggaagaat 123  Q
    |||||||||||    
T  9085933 gaaggaagaat 9085923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 9236234 - 9236124
Alignment:
Q  13 ggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggg 112  Q
    |||||||| ||||| |||||||| || |||||||| || ||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||||||||| |    
T  9236234 ggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatatttatagctacggtatgttgttgcttgagatggttggtg 9236135  T
Q  113 gaaggaagaat 123  Q
    |||| ||||||    
T  9236134 gaagaaagaat 9236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 9069737 - 9069627
Alignment:
Q  13 ggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggg 112  Q
    ||||| ||||||||||||||  | ||| |||| ||||| ||||| |||  |||||| |||||||| |||||||| ||||||||||| || |||||||| |    
T  9069737 ggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagtctgatatatacagttatggaatgttgttgctagaaatggttggag 9069638  T
Q  113 gaaggaagaat 123  Q
    |||| ||||||    
T  9069637 gaagaaagaat 9069627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 9495562 - 9495662
Alignment:
Q  16 tacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggggaa 115  Q
    ||||| ||||| |||||||| ||||| |||||||| ||||| || || ||||| ||| | ||||||| ||| ||||||||||| |||||||| |||||||    
T  9495562 tacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatagttttggaatgttgttgctagagatggtcgggggaa 9495661  T
Q  116 g 116  Q
    |    
T  9495662 g 9495662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 9125205 - 9125095
Alignment:
Q  13 ggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggg 112  Q
    ||||| |||||||| |||||||| ||  |||| ||||| ||||| |||  |||||| ||||| ||||||||||| ||||||||||||||  ||||||| |    
T  9125205 ggatatatggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagtctgatatttatagttatgggatgttgttgctggaattggttggag 9125106  T
Q  113 gaaggaagaat 123  Q
    || | ||||||    
T  9125105 gacgcaagaat 9125095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 9378002 - 9378109
Alignment:
Q  16 tacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggggaa 115  Q
    ||||| ||||| |||||||| || |||||||| || ||||| ||||| ||||| ||||| ||||| || || || |||||||| ||||||||||| || |    
T  9378002 tacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggta 9378101  T
Q  116 ggaagaat 123  Q
    | ||||||    
T  9378102 gaaagaat 9378109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 8861627 - 8861517
Alignment:
Q  13 ggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggg 112  Q
    ||||||||||| || |||||| | || ||||| ||||||||||| |||  |||||| ||||| || ||||| || ||||||||||| || |||||||| |    
T  8861627 ggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagtcagatatttacagttacggaatgttgttgctagaaatggttggag 8861528  T
Q  113 gaaggaagaat 123  Q
    | || ||||||    
T  8861527 ggagaaagaat 8861517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 8979027 - 8978917
Alignment:
Q  13 ggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggg 112  Q
    ||||| |||||||| |||||| | || ||||| ||||| ||||| |||  ||| || ||||| ||||| ||||| ||||||||||| || |||||||  |    
T  8979027 ggatatatggcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatatttatagctatggaatgttgttgctagaaatggttgcag 8978928  T
Q  113 gaaggaagaat 123  Q
    |||||||||||    
T  8978927 gaaggaagaat 8978917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 9437598 - 9437492
Alignment:
Q  10 ttaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttg 109  Q
    ||||| ||||| ||||| ||||| ||||| || |||||||| ||||| || |||||  | || |||||||||||||| |||||  |||| || |||||||    
T  9437598 ttaggttacattgcacctgaagtgttttcgaggaactttggaaatgtatcgtataaagctgacatatatagttatgggatgttactgcttgaaatggttg 9437499  T
Q  110 ggggaag 116  Q
    | |||||    
T  9437498 gaggaag 9437492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 9171780 - 9171992
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||| |  |||| || |||    
T  9171780 attaggatacatggcacccgaagttttttctagaaattttgggaatgtctcttataagtctgatatatatagctatggtatgttgctattggaaattgtt 9171879  T
Q  109 gggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggagacatacaaa 208  Q
    || ||||| |||||| | ||||||||||||| ||||| || |   |||||| | |||||||||||||||||||||||  ||||||||||||| |||||||    
T  9171880 ggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaa 9171979  T
Q  209 tccctatagatga 221  Q
    |||| ||||||||    
T  9171980 tcccaatagatga 9171992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 1883 - 2008
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    |||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || ||||| ||| |||||||||||    
T  1883 attaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatatatacagttacggtatgttattgttggagatggtt 1982  T
Q  109 gggggaaggaagaattcgaacacaac 134  Q
    || ||||| |||||| |||| |||||    
T  1983 ggaggaagaaagaatacgaaaacaac 2008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 15910223 - 15910109
Alignment:
Q  9 attaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggtt 108  Q
    |||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || ||||| ||| |||||||||||    
T  15910223 attaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatatatacagttacggtatgttattgttggagatggtt 15910124  T
Q  109 gggggaaggaagaat 123  Q
    || ||||| ||||||    
T  15910123 ggaggaagaaagaat 15910109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 27696335 - 27696420
Alignment:
Q  34 ttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggggaaggaa 119  Q
    ||||||||||||||||| | ||| || |||||||| ||| | ||||||||||| ||| || | || || |||||||| ||||||||    
T  27696335 ttttctagaaactttggcattgtatcctataagtcagatgtttatagttatgggatgctgcttcttgaaatggttggaggaaggaa 27696420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University