View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_2 (Length: 554)
Name: NF20487_low_2
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Original strand, 7387419 - 7387904
Alignment:
| Q |
16 |
cgaaagacacaacttctt---gaacttgtcattggtgattgacttggtcaaacatatcaattgcattctctaatatacatatcttttcacatgcaaataa |
112 |
Q |
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| T |
7387419 |
cgaaagacacaacttcttcttgaacttatcattggtgattgacttggtcaaacatatcaatggcattctctaatatacatatcttttcacatgcaaataa |
7387518 |
T |
|
| Q |
113 |
ctttgannnnnnngaaacttcacattaatgtattaggtctcacctaattatttattaaataaatgacactcttactatcacaatgtaattgaactccaac |
212 |
Q |
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| T |
7387519 |
ctctgatttttttgaaacttcacatgaatgtattaggtctcacctgattatttattaaataaatgacactcgtactacgacaatgtaattgaactccaac |
7387618 |
T |
|
| Q |
213 |
ttgctcaacacccaatcccctctctaatcatgtaaaatgtaagatctctttgacaaccttaattactactatgtactactcttcaatttcagacattgcc |
312 |
Q |
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|||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
7387619 |
ttgctcaacacccagttccctctctaatcatgtaaactgtaagacctctttgacaaccttaactactgctatgtactactcttcaatttcagacattgcc |
7387718 |
T |
|
| Q |
313 |
actatgaattgatcaaatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatatcatacaacagaaggatcattttgtcc |
412 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7387719 |
actatgaattgaccaaatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatatcctacaacagaaggatcattttgtcc |
7387818 |
T |
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| Q |
413 |
acttaaatatgatacaatgactgttgtcagaggcagatccaatttgtggccatgtgtagctaaaaccacatatccattccctaaag |
498 |
Q |
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| T |
7387819 |
acttaaatatgatacaatgactgttgtcagaggcagatccaatttgtggccatgtgtggctaaaaccacatatccattccctaaag |
7387904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 9726352 - 9726405
Alignment:
| Q |
31 |
cttgaacttgtcattggtgattgacttggtcaaacatatcaattgcattctctaa |
85 |
Q |
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| T |
9726352 |
cttgaacttgtcactgatgactgacttggtc-aacatatcagttgcattctctaa |
9726405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 32492063 - 32492106
Alignment:
| Q |
31 |
cttgaacttgtcattggtgattgacttggtcaaacatatcaattg |
75 |
Q |
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| T |
32492063 |
cttgaacttgtcatttgtgattgacttggtc-aacatatcaattg |
32492106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 32985493 - 32985434
Alignment:
| Q |
169 |
aaataaatgacactcttactatcacaatgtaattgaactccaacttgctcaacacccaat |
228 |
Q |
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| T |
32985493 |
aaataaatgacactctgactatcacaatgcaaccagactccaccttgctcaacacccaat |
32985434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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