View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_20 (Length: 249)
Name: NF20487_low_20
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 37747830 - 37748064
Alignment:
| Q |
15 |
aaaggctcttcttcttcacaatatccaataagattgacaaaattcttgtggttcacttttgataatgtgtctatctgaaaaccataagtttccaaagtta |
114 |
Q |
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| T |
37747830 |
aaaggctcttcttcttcacaatatccaataagattgacaaaattcttgtggttcacttttgataatgtgtctatctgaaaaccataagtttccaaactta |
37747929 |
T |
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| Q |
115 |
agtcacaattgaaatgcttaaatatcaaatctacaaaactactttaaaaattaataccttcttcctaaattgagtttctaaagtccttgtccaactcttg |
214 |
Q |
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| T |
37747930 |
agtcacaattgaaatgcttaaatatcaaatctacaaaactactttaaaaattaataccttcttcctaaattgagtttctaaagtccttgtccaactcttg |
37748029 |
T |
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| Q |
215 |
gataatgtcacagaaacagaagctaccgcaatttc |
249 |
Q |
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| T |
37748030 |
gataatgtcacagaaacagaagctaccgcaatttc |
37748064 |
T |
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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 32067084 - 32067162
Alignment:
| Q |
15 |
aaaggctcttcttcttcacaatatccaataagattgacaaaattcttgtggttcacttttgataatgtgtctatctgaa |
93 |
Q |
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| T |
32067084 |
aaaggctcgtcttcttcacaaaatccaagaagatttacgaaattcttgtggttcatctttgataatgtatctatctgaa |
32067162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 26492413 - 26492455
Alignment:
| Q |
27 |
tcttcacaatatccaataagattgacaaaattcttgtggttca |
69 |
Q |
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| T |
26492413 |
tcttcacaataaccaataagattcacaaaattcttgtggttca |
26492455 |
T |
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