View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20487_low_3 (Length: 470)

Name: NF20487_low_3
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20487_low_3
NF20487_low_3
[»] chr5 (7 HSPs)
chr5 (18-460)||(5663596-5664038)
chr5 (94-276)||(5046332-5046515)
chr5 (94-276)||(5047103-5047286)
chr5 (94-276)||(5047874-5048057)
chr5 (228-424)||(5664702-5664895)
chr5 (323-376)||(5046572-5046625)
chr5 (323-376)||(5047343-5047396)
[»] chr7 (1 HSPs)
chr7 (34-276)||(22622406-22622650)
[»] chr4 (8 HSPs)
chr4 (94-424)||(24853230-24853562)
chr4 (34-419)||(28786834-28787223)
chr4 (109-276)||(51246521-51246689)
chr4 (108-276)||(17525522-17525691)
chr4 (136-276)||(28787887-28788027)
chr4 (97-418)||(24856133-24856448)
chr4 (18-81)||(28787819-28787883)
chr4 (323-373)||(51246738-51246788)
[»] chr1 (5 HSPs)
chr1 (34-254)||(22055518-22055740)
chr1 (32-250)||(22056597-22056817)
chr1 (175-267)||(29371869-29371961)
chr1 (41-164)||(29372998-29373123)
chr1 (322-426)||(22056427-22056530)
[»] chr8 (1 HSPs)
chr8 (18-287)||(1275221-1275486)
[»] scaffold0406 (1 HSPs)
scaffold0406 (94-387)||(6164-6460)
[»] chr3 (8 HSPs)
chr3 (108-276)||(12739240-12739409)
chr3 (108-276)||(12738089-12738258)
chr3 (34-175)||(1896723-1896865)
chr3 (34-175)||(1906169-1906311)
chr3 (33-126)||(2932818-2932913)
chr3 (114-253)||(15022963-15023103)
chr3 (38-125)||(1888660-1888748)
chr3 (108-153)||(12737463-12737509)
[»] chr2 (1 HSPs)
chr2 (116-276)||(20978872-20979034)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 5664038 - 5663596
Alignment:
Q  18 gcatcaaggatgatttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgct 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5664038 gcatcaaggatgagttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctgatcagagaaactagagtagcttaaagttgct 5663939  T
Q  118 acatgttttagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactctt 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663938 acatgttttagattgttctattaatgtctaaattaaattgtagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactctt 5663839  T
Q  218 ctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggcttccat 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663838 ctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggcttccat 5663739  T
Q  318 atactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattt 417  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  5663738 atactatattctctccttctacaatgagctatttatcaatgtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatatattt 5663639  T
Q  418 tctaacaatatactcataagttatgaagggtgccactcctatg 460  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  5663638 tctaacaatatactcgtaagttatgaagggtgccactcctatg 5663596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 94 - 276
Target Start/End: Original strand, 5046332 - 5046515
Alignment:
Q  94 aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 192  Q
    |||||||| || | |||||||||| ||||||| ||||||||| ||||||||||||  |||| ||| |||||||||||||||||||||||||  ||||||     
T  5046332 aaactagaataacataaagttgcttcatgtttatagattgttttattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagat 5046431  T
Q  193 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    | || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||||| ||||||| |||| ||||||||    
T  5046432 aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtatt 5046515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 276
Target Start/End: Original strand, 5047103 - 5047286
Alignment:
Q  94 aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 192  Q
    |||||||| || | ||||||||||||||||||  |||||||||||||||||||||  |||| ||| ||||| ||| |||||||||||||||  | ||||     
T  5047103 aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtctagat 5047202  T
Q  193 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    | || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047203 aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5047286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 276
Target Start/End: Original strand, 5047874 - 5048057
Alignment:
Q  94 aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 192  Q
    |||||||| || | ||||||||||||||||||  |||||||||||||||||||||  |||| ||| ||||| ||| |||||||||||||||  ||||||     
T  5047874 aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtgtagat 5047973  T
Q  193 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    | || ||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047974 aaggcaaacaaaggcctagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5048057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 228 - 424
Target Start/End: Complemental strand, 5664895 - 5664702
Alignment:
Q  228 aaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaata-tattaagggcttccatatactatat 326  Q
    |||||||||||||||| ||||    || |||||||||||| |||||||| || | |||||||||||| |||||| |||| ||||||||| | ||  ||||    
T  5664895 aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaagcttttaaatacaatgacaataatattgagggcttccctgtatcatat 5664800  T
Q  327 tctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaaca 424  Q
    |||||||| ||||||| |  || ||||||||||||| ||||||||||||||| |   |||| | ||| ||| ||| ||||| ||||||||||||||||    
T  5664799 tctctcctcctacaataaattaattaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttctaaca 5664702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 5046572 - 5046625
Alignment:
Q  323 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 376  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5046572 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5046625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 5047343 - 5047396
Alignment:
Q  323 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 376  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5047343 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5047396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 34 - 276
Target Start/End: Complemental strand, 22622650 - 22622406
Alignment:
Q  34 ttgaaattgatacatatttttagaatattctagttaaaa-aatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt 131  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |   | |||||| | |||||||||||||| |||||||| ||||||    
T  22622650 ttgaaattgatacatatttctagaatattctagttaaaataatgataatgtctattagaaaaaactataatagcttaaagttgccacatgtttctagatt 22622551  T
Q  132 gttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaac 231  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||| |||| ||||||||||||| || |||||||| |||||| | ||||| || |||||||    
T  22622550 gttctattaatatctagattaaattgtagcctaaaaacatctacaatattctaatgtagaaaaggcaaacaaagacctagattattctaattctagaaac 22622451  T
Q  232 atcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    ||||||| ||||||||||||||  |||||||||||| ||||||||    
T  22622450 atcttcaggcacttataaataggcttatatgggtgcaattgtatt 22622406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 94 - 424
Target Start/End: Original strand, 24853230 - 24853562
Alignment:
Q  94 aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 192  Q
    |||||||| || | ||||||| ||| |||||| ||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||||    
T  24853230 aaactagaataacataaagtttctaaatgtttctagattgttctattaatatataaattaagttatagccaagaaacatctataataatctaatgtagaa 24853329  T
Q  193 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa-atac 291  Q
    | || ||||||||||||| | | |||||||| || |||||||||| | ||| |||||||||| |||| ||| ||| |||||||| || | ||||| || |    
T  24853330 aaggcaaacaaaggcctaaattattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgc 24853429  T
Q  292 aattacaat-atattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattg 390  Q
    |||  |||| ||||| | ||||||   |||  ||||||| |||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |     
T  24853430 aatgtcaataatattgaaggcttcatcatatcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgctactaaacactc 24853529  T
Q  391 taccactagctcccacaatatatattttctaaca 424  Q
     |||||||||||| ||| ||||| ||||||||||    
T  24853530 caccactagctcctacactatat-ttttctaaca 24853562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 419
Target Start/End: Original strand, 28786834 - 28787223
Alignment:
Q  34 ttgaaattgatacatatttttagaatattctagttaaaa-aatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagat 130  Q
    |||||||||||| |||||| || |||||||||||||||  ||||||||| |   || ||||||| ||||| || |||||||||||||||||||| || ||    
T  28786834 ttgaaattgatatatatttctaaaatattctagttaaattaatgacaatttt--attagagaaaactagaataacttaaagttgctacatgtttctaaat 28786931  T
Q  131 tgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaa 230  Q
    |||| |||||||||||  ||||| || ||||||||||||||||||||| |||| ||||||||| |||| ||||||||||| | | |  ||||| ||||||    
T  28786932 tgttatattaatgtctcgattaagttgtagcctagaaacatctataattatcttatgtagaaaaggaatacaaaggcctaaattat--tagttctagaaa 28787029  T
Q  231 catcttcaagcacttataaatagaattatatgggtgcgattgtatttaa-acatttaaatacaat-tacaatatattaagggctt--cca-tatactata 325  Q
    ||||||||||||| ||||||||||  ||||| ||||| |||||||| ||  | |||| || |||| || |  ||||| | |||||  |||  |||  |||    
T  28787030 catcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgcaatgtatataatattgaaggcttcaccaccatatcata 28787129  T
Q  326 ttctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttc 419  Q
    || |||||| ||| |||||| || |||| |||||||||| |||||| |||||||| |||||| | ||||| ||||||| ||| ||||| |||||    
T  28787130 ttatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgctactaaccactctaccattagctcctacactatattttttc 28787223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 51246521 - 51246689
Alignment:
Q  109 aaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggc 207  Q
    |||||||||| |||||| ||||||| ||||||||||||||  |||| ||| |||||||||||||||||||||||||  |||||| | || ||||||||||    
T  51246521 aaagttgctagatgtttctagattgctctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaaggc 51246620  T
Q  208 ctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    ||||| | |||||||| ||||||||||| ||||||| ||||| |||| |||||||||||| ||||||||    
T  51246621 ctagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtatt 51246689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 108 - 276
Target Start/End: Complemental strand, 17525691 - 17525522
Alignment:
Q  108 taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg 206  Q
    |||||||||||||||||| | |||| |||||||||||||||  |||| ||| |||||||||||||||||||||||||  |||||| | || |||||||||    
T  17525691 taaagttgctacatgtttcttgattattctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaagg 17525592  T
Q  207 cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    |||||| | |||||||| ||||||||||| ||||| |||||||||||| ||||||| |||  ||||||||    
T  17525591 cctagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtatt 17525522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 28787887 - 28788027
Alignment:
Q  136 tattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatct 235  Q
    ||||| |||||  ||||| || ||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| | |||||||| |||||||||||    
T  28787887 tattattgtctcgattaagttgtagcctagaaatatctataattatctaatgtacaaaaggaaaacaaaggcctagattattctagttctagaaacatct 28787986  T
Q  236 tcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    |||| ||| ||||||||||  ||||||||||| ||||||||    
T  28787987 tcaaacacctataaatagacatatatgggtgcaattgtatt 28788027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 418
Target Start/End: Original strand, 24856133 - 24856448
Alignment:
Q  97 ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacg 195  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||||  |||| ||| |||||| |||||        ||| |||||||| || |    
T  24856133 ctagaataacttaaagttgctacatgtttctagattgttctattaatgtctagtttaagttaaagcctataaaca--------aat-taatgtaggaaag 24856223  T
Q  196 gaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa-atacaat 294  Q
    | ||||||||||||||| | |||||||| ||||||||| ||| | ||| |||||||||| ||||  || ||| ||||||||  | | ||||| || ||||    
T  24856224 gcaaacaaaggcctagattattctagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtattccagcctttaagatgcaat 24856323  T
Q  295 tacaata-tattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtac 393  Q
      ||||| |||| |  | |||   |||  |||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |  ||    
T  24856324 gtcaataatattgaaagtttcaccatatcatattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgctactaaacactccac 24856423  T
Q  394 cactagctcccacaatatatatttt 418  Q
    |||||||||  |  |||||||||||    
T  24856424 cactagctcatatgatatatatttt 24856448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 28787819 - 28787883
Alignment:
Q  18 gcatcaaggatgatttttgaaattgatacatatttttagaatattctagttaaaa-aatgacaat 81  Q
    |||||||||| || | ||||||||||||||||||| ||||| |||| |||||||| |||||||||    
T  28787819 gcatcaaggaggagtgttgaaattgatacatatttctagaacattccagttaaaataatgacaat 28787883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 51246738 - 51246788
Alignment:
Q  323 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtcc 373  Q
    |||||||||||| ||||||||||||| || | |||||||||| ||||||||    
T  51246738 atattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcc 51246788  T

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Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 254
Target Start/End: Complemental strand, 22055740 - 22055518
Alignment:
Q  34 ttgaaattgatacatatttttagaatattctagttaaaaa-atgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagat 130  Q
    ||||||||||||||||| | || |||| | |||||||||| ||||||||||||| | ||||||| ||| | ||||||||| |||||| |||||| |||||    
T  22055740 ttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctatt-agagaaaactataatagcttaaatttgctaaatgtttctagat 22055642  T
Q  131 tgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaa 230  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| || |||||||| |||||| | || ||||| |||||     
T  22055641 tgttcaattaatgtctagattaaattgtagcctagaaacatctataataatctaatgtataaaaggcaaacaaagacctagattattttagttctagaat 22055542  T
Q  231 catcttcaagcacttataaataga 254  Q
    ||||||||||||||||||||||||    
T  22055541 catcttcaagcacttataaataga 22055518  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 22056817 - 22056597
Alignment:
Q  32 ttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaa-ctagagtagctt-aaagttgctacatgttt-tag 128  Q
    |||||||||||||||||||||  | | || ||||||||||| ||| || |||||| | ||||||| ||| | |||||| |||||| || ||| ||| |||    
T  22056817 ttttgaaattgatacatatttccaaagtaatctagttaaaatatgccagtgtctatt-agagaaaactataatagctttaaagttacttcatatttctag 22056719  T
Q  129 attgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttaga 228  Q
    |||||||| |||||||||| ||||| || ||||||| |||||||||| ||||||||||||||||| || ||||||| ||||||| | |||||||| ||||    
T  22056718 attgttctgttaatgtctagattaatttgtagcctaaaaacatctatgataatctaatgtagaaaaggcaaacaaatgcctagattattctagttctaga 22056619  T
Q  229 aacatcttcaagcacttataaa 250  Q
    || |||||||||||| ||||||    
T  22056618 aatatcttcaagcacctataaa 22056597  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 29371869 - 29371961
Alignment:
Q  175 taataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgc 267  Q
    ||||||| |||||| |||| || ||||||| | ||||| | ||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  29371869 taataatgtaatgtggaaaaggcaaacaaaagtctagattattcaagtattataaacatcttcaagcacttataaatagatttatatgggtgc 29371961  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 29372998 - 29373123
Alignment:
Q  41 tgatacatatttttagaatattctagttaaaaa-atgacaatgtctaatcagagaaac-tagagtagcttaaagttgctacatgttt-tagattgttcta 137  Q
    |||||||| ||| ||||||| | |||||||||| ||||||||||||| | ||||||   |||| ||| ||||||||||||||||||| ||||||||||||    
T  29372998 tgatacatgtttctagaataatttagttaaaaatatgacaatgtctatt-agagaattatagaatagtttaaagttgctacatgtttctagattgttcta 29373096  T
Q  138 ttaatgtctaaattaaattatagccta 164  Q
     |||| |||| ||||| || |||||||    
T  29373097 ctaatatctagattaagttgtagccta 29373123  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 22056530 - 22056427
Alignment:
Q  322 tatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttcta 421  Q
    |||||||||||||  ||||||||| || |||| ||| |||||| ||||||||||||||| |||| | | ||||| | ||||| ||| ||||| ||||| |    
T  22056530 tatattctctcctcatacaatgagttaattacaaatatgtgtcctcttgtccaatgctactaacaaatctaccattggctcctacactatat-ttttcca 22056432  T
Q  422 acaat 426  Q
    |||||    
T  22056431 acaat 22056427  T

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Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 1275486 - 1275221
Alignment:
Q  18 gcatcaaggatgatttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgc 116  Q
    |||||||||| || | ||||||||||||||||||| |||||| |||||||||| | |  || | ||||| | ||||||| ||||| || || ||||||||    
T  1275486 gcatcaaggaggagtgttgaaattgatacatatttctagaattttctagttaatata--acgacgtctatt-agagaaaactagaataactcaaagttgc 1275390  T
Q  117 tacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactc 215  Q
    ||||||||| |||||| || ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||       
T  1275389 tacatgtttctagattattttattaatgtataaattaagttatagcttagaaacatctataataatctaatgtagaaatggcaaacaaaggcctaga--- 1275293  T
Q  216 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa 287  Q
     ||||||| |||||||| |||||||||| ||||| || |  ||||||||||| |||||||| |||| |||||    
T  1275292 atctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaa 1275221  T

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Target: scaffold0406 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 94 - 387
Target Start/End: Original strand, 6164 - 6460
Alignment:
Q  94 aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa 192  Q
    |||||||| || | ||||||||||||||||||  |||||||||||||||||||||  |||| ||| |||||||||||||||||||||||||  || |||     
T  6164 aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgcagat 6263  T
Q  193 acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacattt-aaatac 291  Q
    | || ||||||||||||||| | |||||||| |||||||| |||||||||| |||||||||| |||||||||||  |||||||| || | ||| | || |    
T  6264 aaggcaaacaaaggcctagattattctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgc 6363  T
Q  292 aattacaat-atattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaacca 387  Q
    |||  |||| ||||| | ||||||   | |  ||||| |||||| ||| ||||||||| || | |||||||||| ||||||||||||||| ||||||    
T  6364 aatgtcaataatattgaaggcttcacaaaatcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaacca 6460  T

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Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 108 - 276
Target Start/End: Original strand, 12739240 - 12739409
Alignment:
Q  108 taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg 206  Q
    |||||||||||||||||| ||||||||||||||||| ||||  |||| ||| |||||||||||||||||||||||||  |||||||| || ||||||| |    
T  12739240 taaagttgctacatgtttctagattgttctattaatatctaggttaagttacagcctagaaacatctataataatcttgtgtagaaaaggcaaacaaaag 12739339  T
Q  207 cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    |||||| | || ||||| ||||||||||| ||||||  ||||||||||||||| ||| ||| ||||||||    
T  12739340 cctagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtatt 12739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 108 - 276
Target Start/End: Original strand, 12738089 - 12738258
Alignment:
Q  108 taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg 206  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||  || |||||||||||||| ||||| ||||  |||||||| || ||||||| |    
T  12738089 taaagttgctacatgtttgtagattgttctattaatgtctagattaaggtaaagcctagaaacatcaataattatcttgtgtagaaaaggcaaacaaaag 12738188  T
Q  207 cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 276  Q
    ||||||   || ||||| ||||||||||| ||||||| |||||||| | |||| ||||||| ||||||||    
T  12738189 cctagataattttagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtatt 12738258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 1896723 - 1896865
Alignment:
Q  34 ttgaaattgatacatatttttagaatattctag-ttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt 131  Q
    ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||||| || |||    
T  1896723 ttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtct-attagaaaaactagaatagcttaaagttgccacatgtttatatatt 1896821  T
Q  132 gttctattaatgtctaaattaaattatagcctagaaacatctat 175  Q
    |||||||| ||| |||  |||| || ||||||||||||||||||    
T  1896822 gttctattgatgactaggttaagttgtagcctagaaacatctat 1896865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 1906169 - 1906311
Alignment:
Q  34 ttgaaattgatacatatttttagaatattctag-ttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt 131  Q
    ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||||| || |||    
T  1906169 ttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtct-attagaaaaactagaatagcttaaagttgccacatgtttatatatt 1906267  T
Q  132 gttctattaatgtctaaattaaattatagcctagaaacatctat 175  Q
    |||||||| ||| |||  |||| || ||||||||||||||||||    
T  1906268 gttctattgatgactaggttaagttgtagcctagaaacatctat 1906311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 2932913 - 2932818
Alignment:
Q  33 tttgaaattgatacatatttttagaatattctagttaa--aaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgtttt 126  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||||||| |   | |||||||| ||||||||||||||||||| ||||    
T  2932913 tttgaaattgatacatatttctagaatattctagttaaaaaaaatgacaatgtctattagaaaaaactagaatagcttaaagttgctacatatttt 2932818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 15022963 - 15023103
Alignment:
Q  114 tgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctaga 212  Q
    ||||| |||||| ||||||||||||||||||| ||  || | ||| || ||| ||||||||||||||||||  |||||| | || ||||||| |||||||    
T  15022963 tgctatatgtttctagattgttctattaatgtttaggttcagttaaagtctaaaaacatctataataatcttgtgtagataaggcaaacaaatgcctaga 15023062  T
Q  213 ctcttctagttttagaaacatcttcaagcacttataaatag 253  Q
     | || ||||| ||||||||||| ||||||| |||||||||    
T  15023063 ttattttagttctagaaacatctacaagcacctataaatag 15023103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 1888660 - 1888748
Alignment:
Q  38 aattgatacatatttttagaatattctagtt-aaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt 125  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||||||||| |   | |||| ||| ||||| |||||||||||||||||    
T  1888660 aattgatgcatatttctagaatattctagttaaaaaaatgacaatgtctattagaaaaaacaagaatagctaaaagttgctacatgttt 1888748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 12737463 - 12737509
Alignment:
Q  108 taaagttgctacatgttt-tagattgttctattaatgtctaaattaa 153  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  12737463 taaagttgctacatgtttgtagattgttctattaatgtctagattaa 12737509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 116 - 276
Target Start/End: Complemental strand, 20979034 - 20978872
Alignment:
Q  116 ctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagact 214  Q
    |||||||||| |||||||||||||| |||| ||  |||| ||| ||||||||||||||||||||||| |  |||||| | || |||||||||  |||| |    
T  20979034 ctacatgtttctagattgttctattcatgtttaggttaagttaaagcctagaaacatctataataatattgtgtagataaggcaaacaaaggtatagatt 20978935  T
Q  215 cttctagttttagaaacatcttc-aagcacttataaatagaattatatgggtgcgattgtatt 276  Q
     |||||||| ||||||||||| | ||| || |||||||| | |||||||||||| ||| ||||    
T  20978934 attctagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatatt 20978872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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