View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_6 (Length: 424)
Name: NF20487_low_6
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 36470424 - 36470815
Alignment:
| Q |
16 |
ataggtggcttgcaagccaaaagcgctattggcctattgctgatgatgaatcttcaacacatgttgtgcaaccgctatttctgatggcagctcgctggcc |
115 |
Q |
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| T |
36470424 |
ataggtggcttgcaagccaaaagcgctattggcctattgctgatgatgaatcttcaacacatgttgtgcaaccgctattgctgatggcagctcgctggcc |
36470523 |
T |
|
| Q |
116 |
aaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactcctatagcgcgctattgacaacatagcttcaaacaacaacaacaggagaaattca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36470524 |
aaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactcctatagcgcgttattgacaacatagcttcaaacaacaacaacaggagaaattca |
36470623 |
T |
|
| Q |
216 |
tggattcattatgatcatgatgaaaatgtgtccgaacctcgcatctttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtatattcca |
315 |
Q |
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| T |
36470624 |
tggattcattatgatcatgatgaaaatgtgtccgaacctcgcatctttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtatattcca |
36470723 |
T |
|
| Q |
316 |
tcaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatatgcctttgcatcatcacttcaaccattttcatcacatcgt |
407 |
Q |
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| T |
36470724 |
tcaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatatgcctttgcatcatcacttcaaccattttcatcacatcgt |
36470815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 49 - 405
Target Start/End: Complemental strand, 21188412 - 21188060
Alignment:
| Q |
49 |
ctattgctgatgatgaatcttcaacacatgttgtgcaaccgctatttctgatggcagctcgctggccaaaagtgtcgcgttgtacccaaccactgctagt |
148 |
Q |
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| T |
21188412 |
ctattgctgatgatgaatcttcaacacatgttgtgcaaccgcgattgctgatggcggctcgctggccaaaagtgtcgcgttgtacccaaccactgctagt |
21188313 |
T |
|
| Q |
149 |
cgctaccatactcctatagcgcgctattgacaacatagcttcaaacaacaacaacaggagaaattcatggattcattatgatcatgatgaaaatgtgtcc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
21188312 |
cgctaccatactcctatagcgcgctattgacaacatagcttcaaacaacaacaa---gagaaattcatggtttcattatgatcatgacgaaaatgtgtcc |
21188216 |
T |
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| Q |
249 |
gaacctcgcatctttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtatattccatcaaagtccacacatcagagagcttgaatcaat |
348 |
Q |
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| T |
21188215 |
gaacctcacat-tttaaaaatgattggtagactaataaaccaaaagaaagaccatttgtatattccatcaaagtccacacatcagagagcttgaatcaat |
21188117 |
T |
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| Q |
349 |
gatgcagagtcaatatatatgcctttgcatcatcacttcaaccattttcatcacatc |
405 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
21188116 |
gatgcagagtcaatatatatgcctttggatcatcagttcaaccattctcatcacatc |
21188060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 161 - 405
Target Start/End: Complemental strand, 29390267 - 29390024
Alignment:
| Q |
161 |
cctatagcgcgctattgacaacatagcttcaaacaacaacaacaggagaaattcatggattcattatgatcatgatgaaaatgtgtccgaacctcgcatc |
260 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||| |
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| T |
29390267 |
cctatagcgcccaattgacaacatagcttcaaacaacaacaacaagagaaattcatggtttcattatgatcatgacgaaaatgtgtctgaacctcacat- |
29390169 |
T |
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| Q |
261 |
tttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtatattccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtca |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29390168 |
tttaaaaatgattggtagactaataaaccaaaagaaagaccatttgtatattccattaaagtccacacatcagagagcttgaatcaatgatgcagagtca |
29390069 |
T |
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| Q |
361 |
atatatatgcctttgcatcatcacttcaaccattttcatcacatc |
405 |
Q |
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||||||| ||||||||||||||| |||||||||| || ||||||| |
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| T |
29390068 |
atatatacgcctttgcatcatcagttcaaccattctcgtcacatc |
29390024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 401
Target Start/End: Original strand, 32132641 - 32132739
Alignment:
| Q |
299 |
aacatttgtatattccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatatgcctttgcatcatcacttcaaccattttca |
398 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |
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| T |
32132641 |
aacatttgtatattccatcaaagtccttgcattagagagcttgaatcaatgatgcagagtca----ctatgcctttgcatcatccactcaaccattttaa |
32132736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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