View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20487_low_9 (Length: 338)
Name: NF20487_low_9
Description: NF20487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20487_low_9 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 506182 - 505863
Alignment:
| Q |
1 |
attgtgtttctgggaaaaccaatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctgtccgaggccaaac |
100 |
Q |
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| T |
506182 |
attgtgtttctgggaaaaccaatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctgtccgaggccaaac |
506083 |
T |
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| Q |
101 |
attataccatgttttgagttgtgcttcatggtcggaatatgtggtggttgatatcaattaccttgttaaagttgatccaaacattaatctagcttatgct |
200 |
Q |
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| T |
506082 |
attataccatgttttgagttgtgcttcatggtcggaatatgtggtggttgatatcaattaccttcttagagttgatccaaacattaatctagcttatgct |
505983 |
T |
|
| Q |
201 |
agtttcatctcatgtgggttttcaactggttatggagcttgttggaaagaagccaatattgaaagtggttcaactgtagctgtttttggtcttggggctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505982 |
agtttcatctcatgtgggttttcaactggttatggagcttgttggaaagaagccaatattgaaagtggttcaactgtagctgtttttggtcttggggctg |
505883 |
T |
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| Q |
301 |
ttggattaggggtatgtatg |
320 |
Q |
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|||||||||||||||||||| |
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| T |
505882 |
ttggattaggggtatgtatg |
505863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 20052076 - 20051762
Alignment:
| Q |
1 |
attgtgtttctgggaaaaccaatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctgtccgaggccaaac |
100 |
Q |
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| T |
20052076 |
attgtgtttcaagaaaaaccaatctttgtcttacataccctgtgagattcaccggtctaatgcccgataacacttcaagattgtccgttcgaggccaaag |
20051977 |
T |
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| Q |
101 |
attataccatgttttgagttgtgcttcatggtcggaatatgtggtggttgatatcaattaccttgttaaagttgatccaaacattaatctagcttatgct |
200 |
Q |
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| |||| |||||||||||||||||| |||||||||| ||||| || |||||| |||| |||||| | ||||| ||||||| |||||||||||||||||| |
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| T |
20051976 |
actatatcatgttttgagttgtgctacatggtcggagtatgtcgttgttgatgtcaactaccttctcaaagtcgatccaaccattaatctagcttatgca |
20051877 |
T |
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| Q |
201 |
agtttcatctcatgtgggttttcaactggttatggagcttgttggaaagaagccaatattgaaagtggttcaactgtagctgtttttggtcttggggctg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| || |||||||||||| ||| ||||| ||||||||||| |||| |
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| T |
20051876 |
agtttcatctcatgtgggttttcaactggttatggtgctgcttggaaggaagccaaggttaaaagtggttcaagtgttgctgtgtttggtcttggagctg |
20051777 |
T |
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| Q |
301 |
ttggattaggggtat |
315 |
Q |
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|||| |||||||||| |
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| T |
20051776 |
ttggcttaggggtat |
20051762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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