View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20488_high_2 (Length: 561)
Name: NF20488_high_2
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 8e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 159 - 337
Target Start/End: Complemental strand, 491863 - 491688
Alignment:
| Q |
159 |
tatacatcatcaacctttcccgtttctcactcattatctggaattcctccctcgacctctcttacttttgcggtgacctagacgagcttcttggagaaat |
258 |
Q |
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| T |
491863 |
tatacatcatcaaccgttcccgtttctcactcattatctggaattcctccctcgacctctcttactttcgcggtgacctagacgagcttcttggagaaat |
491764 |
T |
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| Q |
259 |
ctctagttgttttccacttaaaatcacgtcactcaatcttggagagcttctttcaacattaaatctatcggtatccctc |
337 |
Q |
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| T |
491763 |
ctcta---gttttccacttaaaatcacgtcactcaatcttggagagcttcttgcaacattaaatctatcggtatccctc |
491688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 421 - 545
Target Start/End: Complemental strand, 491147 - 491018
Alignment:
| Q |
421 |
atttattttaaaactgacatgatttttatttt-----gtttcgacttgccaactgtgaatacttcgctatggttttgtttgccttgcattatattcattt |
515 |
Q |
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| T |
491147 |
atttattttacaactgacatgatttttattttattttgtttcgacttgccaactgtgaatatttcgctatggttttgtttgccttgcattatattcattt |
491048 |
T |
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| Q |
516 |
tctaccaatgattttgttcatgttatcctg |
545 |
Q |
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| T |
491047 |
tctaccaatgattttggtcatgttatcctg |
491018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 491987 - 491943
Alignment:
| Q |
29 |
agagcatgtcaaagattcttataatgcaatgaaggaatgaatgtt |
73 |
Q |
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| T |
491987 |
agagcatgtcaaagattcttataatgcaatgaaggaatgtatgtt |
491943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 491652 - 491615
Alignment:
| Q |
376 |
ctgaggaaggtattggtcaaattttaattaaggagata |
413 |
Q |
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| T |
491652 |
ctgaggaaggtattggtcaaattttaattaaggagata |
491615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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