View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20488_high_4 (Length: 524)
Name: NF20488_high_4
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Complemental strand, 13648234 - 13647737
Alignment:
| Q |
12 |
cacagaccacactttccaaagttgaattccacccattatgtgtcaaaaacgcaccaattgccttatgtgacaaaacttcctcttgtgggacccacccaac |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13648234 |
cacaaaccacactttccaaagttgaattccacccattatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgtgggacccacccaac |
13648135 |
T |
|
| Q |
112 |
aatcaaccctttttccttactagtcccttcctcaagctcacttaataatcctttttcttgtaccatgtttggcctaatcacccataaaaactgttttttg |
211 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13648134 |
aatcaaacctttttccttacgagtcccttcctcaagctcacttaataatcctttttcttgtaccatgtttggcctaatcacccataaaaactgttttttg |
13648035 |
T |
|
| Q |
212 |
ctattcaataaaccatgccaaatctcaattatttcttctctcttcattggtgtagtgcttccaaagctaacatatataactgatttcaattgttgagagt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13648034 |
ctattcaataaaccatgccaaatctcaattatttcttctctcttcattggtgtagtgcttccaaagctaacatatataactgatttcaatggttgagagt |
13647935 |
T |
|
| Q |
312 |
caagccactccatgcaggttctatccactttgaagaaattgctcttaaagaaaaaagatgatggaaatgatgattttttggttgtattgaggaggtggtg |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13647934 |
caagccacgccatgcaggttctatccactttgaagaaattgctcttagagaaaaaagatgatggaaatgatgattttttggttgtattgaggaggtggtg |
13647835 |
T |
|
| Q |
412 |
aagagggcctatggtgtagagtttagggaagtgaatacgaatttgggagaggactgaggcttctagatcctcaaatgtgttgagtatgaatgcatttg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13647834 |
aagagggcctatggtgtagagtttagggaagtgaatacgaatttgggagaggactgaggcttctagatcctcaaatgtgttgagtatgaatgcatttg |
13647737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 507
Target Start/End: Complemental strand, 13658762 - 13658267
Alignment:
| Q |
12 |
cacagaccacactttccaaagttgaattccacccattatgtgtcaaaaacgcaccaattgccttatgtgacaaaacttcctcttgtgggacccacccaac |
111 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| ||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| || |
|
|
| T |
13658762 |
cacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcctcttgtggaacccaccccac |
13658663 |
T |
|
| Q |
112 |
aatcaaccctttttccttactagtcccttcctcaagctcacttaataatcctttttcttgtaccatgtttggcctaatcacccataaaaactgttttttg |
211 |
Q |
| |
|
||||| |||||| || ||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
13658662 |
aatcatccctttctctttagtagtcccttcctcaagctccttcaatagtcctttttcttgtaccatgtttggcctaatcacccacaaaaatggttttttg |
13658563 |
T |
|
| Q |
212 |
ctattcaataaaccatgccaaatctcaattatttcttctctcttcattggtgtagtgcttccaaagctaacatatataactgatttcaattgttgagagt |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| ||||||||| || |||| |||||||||||||||| ||| |||||||| ||||||| | |
|
|
| T |
13658562 |
ctattcaataaaccgtgccaaatctcaatgatttcttctcccttcattggggtgatgctaccaaagctaacatatacaaccgatttcaacggttgagatt |
13658463 |
T |
|
| Q |
312 |
caagccactccatgcaggttctatccactttgaagaaattgctcttaaagaaaaaagatgatggaaatgatgattttttggttgtattgaggaggtggtg |
411 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||||||||||| || | | || |||| |||||| |||||| || || |||||| ||||||| |
|
|
| T |
13658462 |
caagccatgtcatgcaagttctatccacttcgaagaaattgctcttggaggaggaggacgatgacgatgatgttttttttgtggtgttgaggtggtggtg |
13658363 |
T |
|
| Q |
412 |
aagagggcctatggtgtagagtttagggaagtgaatacgaatttgggagaggactgaggcttctagatcctcaaatgtgttgagtatgaatgcatt |
507 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||||||||| ||||| ||| || |||||||| ||| || ||||||||||| | |||||| |
|
|
| T |
13658362 |
aagagggccaatggtgtagagtttaggggcatgaagacgaatttgagagagagctggggattctagattctcgaacgtgttgagtattagtgcatt |
13658267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 507
Target Start/End: Complemental strand, 13653289 - 13652803
Alignment:
| Q |
12 |
cacagaccacactttccaaagttgaattccacccattatgtgtcaaaaacgcaccaattgccttatgtgacaaaacttcctcttgtgggacccacccaac |
111 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
13653289 |
cacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgtggagcccactccac |
13653190 |
T |
|
| Q |
112 |
aatcaaccctttttccttactagtcccttcctcaagctcacttaataatcctttttcttgtaccatgtttggcctaatcacccataaaaactgttttttg |
211 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| || ||| || || ||||||||||||||||||||| ||||||||||| || || ||||||| |
|
|
| T |
13653189 |
aatcaaacctttctccttactagtcccttcctcaagttcttttattagtcttttttcttgtaccatgtttggtctaatcacccacaagaatgcttttttg |
13653090 |
T |
|
| Q |
212 |
ctattcaataaaccatgccaaatctcaattatttcttctctcttcattggtgtagtgcttccaaagctaacatatataactgatttcaattgttgagagt |
311 |
Q |
| |
|
|| ||||| ||||| ||||||| ||||| ||||||||||||| |||||| ||| |||||||||||||||||||||| |||||| ||||| ||||||| | |
|
|
| T |
13653089 |
ctgttcaacaaaccgtgccaaaactcaagtatttcttctctcgtcattgttgtggtgcttccaaagctaacatatacaactgacttcaacggttgagatt |
13652990 |
T |
|
| Q |
312 |
caagccactccatgcaggttctatccactttgaagaaattgctcttaaagaaaaaagatgatggaaatgatgattttttggttgtattgaggaggtggtg |
411 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||| || |||||||||| ||| || |||||| | ||||||||| ||||||| |
|
|
| T |
13652989 |
cgagccatgtcatgcaggttctatccactttgaagaaattg------gagttgaaagatgatg---atgttgtttttttcatggtattgaggtggtggtg |
13652899 |
T |
|
| Q |
412 |
aagagggcctatggtgtagagtttagggaagtgaatacgaatttgggagaggactgaggcttctagatcctcaaatgtgttgagtatgaatgcatt |
507 |
Q |
| |
|
||| ||||| || ||||||||||| |||||||| | ||||||||||||||| | || || |||| ||| ||||||||||||||||| | |||||| |
|
|
| T |
13652898 |
aagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctaaatcttcaaatgtgttgagtattactgcatt |
13652803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 26672162 - 26672241
Alignment:
| Q |
20 |
acactttccaaagttgaattccacccattatgtgtcaaaaacgcaccaattgccttatgtgacaaaacttcctcttgtgg |
99 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
26672162 |
acactttccaacgttgaattccaaccattatgtgtcaaaaaccctccaattgatgaatgtcccaaaacttcctcttgtgg |
26672241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 26943760 - 26943839
Alignment:
| Q |
20 |
acactttccaaagttgaattccacccattatgtgtcaaaaacgcaccaattgccttatgtgacaaaacttcctcttgtgg |
99 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
26943760 |
acactttccaacgttgaattccaaccattatgtgtcaaaaaccctccaattgatgaatgtcccaaaacttcctcttgtgg |
26943839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 20156859 - 20156911
Alignment:
| Q |
32 |
gttgaattccacccattatgtgtcaaaaacgcaccaattgccttatgtgacaa |
84 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
20156859 |
gttgaattccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaa |
20156911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 27224168 - 27224227
Alignment:
| Q |
25 |
ttccaaagttgaattccacccattatgtgtcaaaaacgcaccaattgccttatgtgacaa |
84 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
27224168 |
ttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaa |
27224227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 31210072 - 31210024
Alignment:
| Q |
20 |
acactttccaaagttgaattccacccattatgtgtcaaaaacgcaccaa |
68 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||| |||| ||||||| |
|
|
| T |
31210072 |
acactctccaaagttgaattccaaccattatgagtccaaaatgcaccaa |
31210024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University