View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20488_low_10 (Length: 286)
Name: NF20488_low_10
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 43500652 - 43500376
Alignment:
| Q |
1 |
tgctgcacatgattgatgcaataatataatatagtccaccattgtaaagcactagttagtggctacattaaattacattacatattatatatacaccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
43500652 |
tgctgcacatgattgatgcaataatataatatagtccaccattgtaaagcactagttagtggctacattacattacat---atattatatatacaccaat |
43500556 |
T |
|
| Q |
101 |
ttgttcttctttgttattattaattttagcatcttcctttggtttatgagagcctgctgccaaagtatgaccagaattattagcataatcacaatcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43500555 |
ttgttcttctttgttattattaattttagcatcttcctttggtttatgagagcctgctgccaaagtatgaccagaattattagcataatcacaatcacaa |
43500456 |
T |
|
| Q |
201 |
cgttgttggtcaccttggccgtgttctattttgttttcaaccattcgaatgtaccctttctttacatggccgtctctgtg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43500455 |
cgttgttggtcaccttggccgtgttctattttgttttcaaccattcgaatgtaccctttctttacatggccgtcactgtg |
43500376 |
T |
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