View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20488_low_11 (Length: 279)
Name: NF20488_low_11
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 121 - 269
Target Start/End: Original strand, 5215975 - 5216124
Alignment:
| Q |
121 |
gtcatagaagatcaaaaatatgctgacttagcaatattgaagactgcatatgaactgaatatcaaagatatttttgttcatatatagttc---taatgaa |
217 |
Q |
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| T |
5215975 |
gtcatagaagatcaaaagtatgcagacttagcaatattggaggcttcatatgaacttaatatcaaagatatttttattc--atatagttctattaatgta |
5216072 |
T |
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| Q |
218 |
attggaaaaatgtgtatgtcatgtttattaaaattctaatcatgttcctatg |
269 |
Q |
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| T |
5216073 |
ataggaaaaatgtgtatgtcatgtttattaaaattctaatcatgttcctatg |
5216124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 4854983 - 4854928
Alignment:
| Q |
18 |
attaatgcttatataatttactctatgttgcaagtctgtaatagcaatcagaagaa |
73 |
Q |
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| T |
4854983 |
attaatgcttatataatttactctatgttgtcagtttgtaatagcaatcaaaagaa |
4854928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 5162195 - 5162283
Alignment:
| Q |
97 |
tcaatgagctaactgtatatatgagtcatagaagatcaaaaatatgctgacttagcaatattgaagactgca-tatgaactgaatatca |
184 |
Q |
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| T |
5162195 |
tcaattagctaactgtatacatttgtcatagaatatcaaaattatgcagactcagaaatattgaagacttcattatgaacttaatatca |
5162283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 5203866 - 5203908
Alignment:
| Q |
221 |
ggaaaaatgtgtatgtcatgtttattaaaattctaatcatgtt |
263 |
Q |
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| T |
5203866 |
ggaaaaatgtgtatgtaatgtttattaaaattctgatcgtgtt |
5203908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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