View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20488_low_12 (Length: 259)
Name: NF20488_low_12
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 33649790 - 33650013
Alignment:
| Q |
17 |
aagaggtagttcgccagatttttagcgttgatatagctgctaagattcttaacatgccacttattgctcaggtccaagatgaccgtttaatctggaaagc |
116 |
Q |
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| T |
33649790 |
aagaggtagttcgccaggtttttagcgttgatatagctgctaagattcttaacatgccacttattgctcaggtccaagatgaccgtttaatctggaaagc |
33649889 |
T |
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| Q |
117 |
ggaaaagaatggtcgttatactgtgtgcggtgcttatcgactctgtattgacgagctcattgattcttctcatctccgtcgtacgacgttcttgatcaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33649890 |
ggaaaagaatggtcgttatactgtgtgcggtgcttatcgactctgtattgacgagctcattgattcttctcatctccgtcgtacga-gttcttgatcaag |
33649988 |
T |
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| Q |
217 |
aatttggaagcttaaggttcctcct |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
33649989 |
aatttggaagcttaaggttcctcct |
33650013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 49498338 - 49498561
Alignment:
| Q |
17 |
aagaggtagttcgccagatttttagcgttgatatagctgctaagattcttaacatgccacttattgctcaggtccaagatgaccgtttaatctggaaagc |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49498338 |
aagaggtagttcgccagatttttagtgttgatatagctgctaagattcttaacacgccacttattgctcaggttcaagatgaccgtttaatctggaaagc |
49498437 |
T |
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| Q |
117 |
ggaaaagaatggtcgttatactgtgtgcggtgcttatcgactctgtattgacgagctcattgattcttctcatctccgtcgtacgacgttcttgatcaag |
216 |
Q |
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| T |
49498438 |
agaaaaaaatggtcgttattctgtacgtagtgcttatcggctatgtgttaatgagttaattgattcttctcatctccgtcgt-ccaggttcttggtcagg |
49498536 |
T |
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| Q |
217 |
aatttggaagcttaaggttcctcct |
241 |
Q |
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| T |
49498537 |
aatttggaagcttaaagttcctcct |
49498561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 29956670 - 29956498
Alignment:
| Q |
17 |
aagaggtagttcgccagatttttagcgttgatatagctgctaagattcttaacatgccacttattgctcaggtccaagatgaccgtttaatctggaaagc |
116 |
Q |
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|||||||||||||| || || |||| ||||||||||||| ||||||| |||||| |||||||||||| || |||||||||| ||||||||||||||||| |
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| T |
29956670 |
aagaggtagttcgctaggttcttagtgttgatatagctgataagatttttaacacgccacttattgcctagttccaagatgatcgtttaatctggaaagc |
29956571 |
T |
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| Q |
117 |
ggaaaagaatggtcgttatactgtgtgcggtgcttatcgactctgtattgacgagctcattgattcttctcat |
189 |
Q |
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|||||||||| |||||||| ||||||| ||| ||||| || ||| | ||||||| | ||| |||||||||| |
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| T |
29956570 |
ggaaaagaatagtcgttattctgtgtgtagtgattatccgctttgtttggacgagcccgttgtttcttctcat |
29956498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 19234559 - 19234611
Alignment:
| Q |
43 |
gttgatatagctgctaagattcttaacatgccacttattgctcaggtccaaga |
95 |
Q |
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||||||||||||| |||||||||| ||| |||||||||||||||||| ||||| |
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| T |
19234559 |
gttgatatagctgataagattcttcacacgccacttattgctcaggtacaaga |
19234611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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