View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20488_low_3 (Length: 533)
Name: NF20488_low_3
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 3414198 - 3413695
Alignment:
| Q |
18 |
ataagttaggagtagtttgttaggggaatgagaatttcttaggggcagtaatcaaactttaaacctctttgtaatttttcaatatttcaatcagtttaaa |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
3414198 |
ataagtaaggagtagtttgttaggggaatgagaatttcttaggggcagtaatcaaactttaaacctcttagtaatttttcaatatttcaatcaatttaaa |
3414099 |
T |
|
| Q |
118 |
ttgtgtgtgttttgtgttggacaatgaagataatactttggttcgctcgtcgtgcgtaaaagcaaaattgctttgcggatatgttttattccgagtctaa |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |
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| T |
3414098 |
ttgtgtgt--tttgtgttggacaatgaagataatactttggtttgctcgtcgtgcgtaaaagtaaaattgctttgccgatatgttttattccaagtctaa |
3414001 |
T |
|
| Q |
218 |
ttcttcaaccgcctctttattttcatctacacttttgtcttttacccttaaaaatagttcataacaatatttgttcctctttttgttggtttatctaaat |
317 |
Q |
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|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3414000 |
ttcttcaaccacctctttattttcatgtacatttttgtcttttacccttaaaaatagttcataacaatatttgttcctctttttgttggtttatctaaat |
3413901 |
T |
|
| Q |
318 |
tgtgtgtgtattttgatttggacaatgaagataatacttggttcactcatcgttattttaatgcaatcttttgatatgttttatttcgagtccatttcta |
417 |
Q |
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| T |
3413900 |
tgtgtgtgtattttgatttggacaatgaagataatacttggttcactcatcgttattttaatgtaaccttttgatatgttttatttcgagtccatttcta |
3413801 |
T |
|
| Q |
418 |
caatgtctctttattttaatgcaaccttttgccttctatcctttaaaaaagttcacaacaagatttgttcatcttttcattggtttatctacattatgtg |
517 |
Q |
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| T |
3413800 |
caatgtctctttaatttaatgcaaccttttgccttctatcctttaaaaaagttcacaataagatttgttcatcttttcattggtttatctacattgtgtg |
3413701 |
T |
|
| Q |
518 |
tatttt |
523 |
Q |
| |
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|||||| |
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| T |
3413700 |
tatttt |
3413695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 117 - 370
Target Start/End: Complemental strand, 3413708 - 3413455
Alignment:
| Q |
117 |
attgtgtgtgttttgtgttggacaatgaagataatactttggttcgctcgtcgtgcgtaaaagcaaaattgctttgcggatatgt-tttattccgagtct |
215 |
Q |
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||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||| |
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| T |
3413708 |
attgtgtgtattttgttttggacaatgaagataatactt-ggttcgctcgtcgtgcgtaaaagcaaagttgctttgccgatatatgtttattccgagtcc |
3413610 |
T |
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| Q |
216 |
aattcttcaaccgcctctttattttcatctacactttt---gtcttttacccttaaaaatagttcataacaatatttgttcctctttttgttggtttatc |
312 |
Q |
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| T |
3413609 |
atttcttcaatttcctctttattttcatgtacatttttttggccccctaccatttaa---agttcacaacaagatttgttcctcttttcatttgtttatc |
3413513 |
T |
|
| Q |
313 |
taaattgtgtgtgtattttgatttggacaatgaagataatacttggttcactcatcgt |
370 |
Q |
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| T |
3413512 |
taaattgtgtgtgtattttgttttggacaatgaagataatacttggttcgctcgtcgt |
3413455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 3413505 - 3413426
Alignment:
| Q |
119 |
tgtgtgtgttttgtgttggacaatgaagataatactttggttcgctcgtcgtgcgtaaaagcaaaattgctttgcggatat |
199 |
Q |
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| T |
3413505 |
tgtgtgtattttgttttggacaatgaagataatactt-ggttcgctcgtcgtgcgtaaaagcaaagttgctttgccgatat |
3413426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 3413775 - 3413656
Alignment:
| Q |
249 |
cttttgtcttttacccttaaaaatagttcataacaatatttgttcctctttttgttggtttatctaaattgtgtgtgtattttgatttggacaatgaaga |
348 |
Q |
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| T |
3413775 |
cttttgccttctatcctttaaaaaagttcacaataagatttgttcatcttttcattggtttatctacattgtgtgt--attttgttttggacaatgaaga |
3413678 |
T |
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| Q |
349 |
taatacttggttcactcatcgt |
370 |
Q |
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||||||||||||| ||| |||| |
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| T |
3413677 |
taatacttggttcgctcgtcgt |
3413656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 3413554 - 3413501
Alignment:
| Q |
465 |
aaagttcacaacaagatttgttcatcttttcattggtttatctacattatgtgt |
518 |
Q |
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| T |
3413554 |
aaagttcacaacaagatttgttcctcttttcatttgtttatctaaattgtgtgt |
3413501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 3413348 - 3413293
Alignment:
| Q |
465 |
aaagttcacaacaagatttgttcatcttttcattggtttatctacattatgtgtat |
520 |
Q |
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|||| |||||||||||||||||| ||||||||||| |||||| | || |||||||| |
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| T |
3413348 |
aaagatcacaacaagatttgttcctcttttcattgatttatccaaatcatgtgtat |
3413293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 520
Target Start/End: Original strand, 3433477 - 3433532
Alignment:
| Q |
465 |
aaagttcacaacaagatttgttcatcttttcattggtttatctacattatgtgtat |
520 |
Q |
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| T |
3433477 |
aaagatcacaacaagatttgttcctcttttcattgatttatccaaatcatgtgtat |
3433532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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