View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20488_low_5 (Length: 385)
Name: NF20488_low_5
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 113 - 367
Target Start/End: Original strand, 43500749 - 43501021
Alignment:
| Q |
113 |
gtctacggtgtatattgagggtctgagaaaaggaaatattcctaaagt--------------atcgaatgctacagtgtgttattcttcctcccagccta |
198 |
Q |
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| T |
43500749 |
gtctacggtgtatattgagggtctgagaaaaggaaatattcctaaagtgattacaagttcctatcgaatgctacagtgtgttattcttcctcccagccta |
43500848 |
T |
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| Q |
199 |
acatcaacaattattacaaccgcgt----atatgatagtataatttgggccaggctcaaaatatacatcattttttaagtatactttttctatcgaattt |
294 |
Q |
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| T |
43500849 |
acatcaacaattattacaaccgcgttactatatgatagtataatttgggtcaggctcaaaatatacatcattttttaagtatactttttctatcgaattt |
43500948 |
T |
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| Q |
295 |
cttaacgattatccttagaaaacttgttagtgaatacaagtttgattgagtagttaggtatctctcatccaat |
367 |
Q |
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| T |
43500949 |
cttaacgattatccttagaaaacttgttagtgaatacaagtttgattgagtaggtaggtatctctcatccaat |
43501021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43500637 - 43500711
Alignment:
| Q |
1 |
tcaatcatgtgcagcacatgggctattggagaggtggtggttttaggacttagcatagtgatggctgtgaaattg |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43500637 |
tcaatcatgtgcagcacatgggctattggagaggtggtggttttaggacttagcatagtgatggctgtgaaattg |
43500711 |
T |
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