View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20488_low_6 (Length: 370)
Name: NF20488_low_6
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_low_6 |
 | |
|
| [»] scaffold0740 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 20926488 - 20926452
Alignment:
| Q |
23 |
aattctacccaaggagggttctaagctaataggaact |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20926488 |
aattctacccaaggagggttctaagctaataggaact |
20926452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0740 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0740
Description:
Target: scaffold0740; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 2026 - 2071
Alignment:
| Q |
14 |
cataggataaattctacccaaggagggttctaagctaataggaact |
59 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2026 |
catagcatacattctacccaaggagggttctaaactaataggaact |
2071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University