View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20488_low_8 (Length: 332)
Name: NF20488_low_8
Description: NF20488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20488_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 24480859 - 24481176
Alignment:
| Q |
1 |
gcatgtttatagaaagaataattttagttcaaaatgaaagtannnnnnnncaaaatttcatgaacatcatcaagattagcaacaacaaatacgaaactat |
100 |
Q |
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| T |
24480859 |
gcatgtttatagaaagaataattttagttcaaaatgaaagtattttttttcaaaatttcatgaacatcatcaagattagcaacaacaaatacgaaactat |
24480958 |
T |
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| Q |
101 |
atatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaaaatgatacaacatggagtccaaagcatagctttatta |
200 |
Q |
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| T |
24480959 |
atatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaaaatgatacaacatggagtccaaagcatagctttatta |
24481058 |
T |
|
| Q |
201 |
cagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcatagtataactattggaaggagtcaaaatgcatatgtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24481059 |
cagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcatagtataactattggaaggagtcaaaatgcatatgtca |
24481158 |
T |
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| Q |
301 |
tcaagcttaatacacagg |
318 |
Q |
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|||||||||||||||||| |
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| T |
24481159 |
tcaagcttaatacacagg |
24481176 |
T |
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