View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20489_high_1 (Length: 461)
Name: NF20489_high_1
Description: NF20489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20489_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 197 - 446
Target Start/End: Complemental strand, 8689035 - 8688775
Alignment:
| Q |
197 |
gtagcttcattttattaatccaagttttgtgaccttggatggaacactctaaccttcatttttacgttatcattatatgttttgccaagcaattcattat |
296 |
Q |
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| T |
8689035 |
gtagcttcattttattaatccaagttttgtgacct-ggatggaacactctaaccttcatttttacgttatcattatatgttttgccaagcaattcattaa |
8688937 |
T |
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| Q |
297 |
caaaca------tttccatcttctttttcagaggacaatgacccgtttatatcgccttaaaagctccattatgtacctttattccaactacataatcatc |
390 |
Q |
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| T |
8688936 |
caaacacacgtatttccatcttctttttcagaggacaatgacccgtttatatcgccttaaaaactccattatgtaccttctttccaactacaaaatcatc |
8688837 |
T |
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| Q |
391 |
aat----aatccc--attctttcaaggtacatatatttcccttcataaaacagcatcatatt |
446 |
Q |
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| T |
8688836 |
aatcaataatccctaattctttcaaggtacatatatttcccttcataaaacagcatcatatt |
8688775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 8689957 - 8689808
Alignment:
| Q |
14 |
ataattcttaatataaaattttaatttcaaacttcttaacaaatatcttaaggacactccttagcattttctttaaaagaaaaacaacattcaacatcca |
113 |
Q |
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| T |
8689957 |
ataattcttaatataaaattt-aatttcaaacttcttaacaaatatcctaaggacactcgttagcatttcctttaaaagaaaaacaacattcaacatcca |
8689859 |
T |
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| Q |
114 |
atagtaaatattcgtatatctctcatagtcgagattcaaatatcgttgctt |
164 |
Q |
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| T |
8689858 |
atagtaagcatttgcatatctctcacagtcgagattcaaatatcgttgctt |
8689808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 326 - 421
Target Start/End: Complemental strand, 8697447 - 8697352
Alignment:
| Q |
326 |
caatgacccgtttatatcgccttaaaagctccattatgtacctttattccaactacataatcatcaataatcccattctttcaaggtacatatatt |
421 |
Q |
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| T |
8697447 |
caatgacccgtttatatcgccttaaaagctccattatgtacctttattccaactacataatcatcaataatcccattctttcaaggtacatatatt |
8697352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 8672575 - 8672626
Alignment:
| Q |
251 |
ttcatttttacgttatcattatatgttttgccaagcaattcattatcaaaca |
302 |
Q |
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| T |
8672575 |
ttcatttttacattatcattatatgttttgccaagcaattcattaacaaaca |
8672626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 11317062 - 11317099
Alignment:
| Q |
45 |
cttcttaacaaatatcttaaggacactccttagcattt |
82 |
Q |
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| T |
11317062 |
cttcttaactaatatcttaaggacactctttagcattt |
11317099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 29260145 - 29260108
Alignment:
| Q |
45 |
cttcttaacaaatatcttaaggacactccttagcattt |
82 |
Q |
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| T |
29260145 |
cttcttaacaaatgtcttaaggacactctttagcattt |
29260108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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