View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20489_low_2 (Length: 235)
Name: NF20489_low_2
Description: NF20489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20489_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39704587 - 39704808
Alignment:
| Q |
1 |
tggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatgatgaatgttatctgtgttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39704587 |
tggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttaagaggttatgatgttatgatgaatgttatctgtgttt |
39704686 |
T |
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| Q |
101 |
ggttggaataataataagtgataatgataatatgatcttcttctctcctacattttctatgaaaaaatattattcatgacatatattgcatctacaacag |
200 |
Q |
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| T |
39704687 |
ggttggaataataataagtgataatgataatatgatcttcttctctcctacattttctatgaaaaaatattattcatgacatatattgcatctacaacag |
39704786 |
T |
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| Q |
201 |
cattagtatcaagtcatatttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39704787 |
cattagtatcaagtcatatttg |
39704808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39695678 - 39695740
Alignment:
| Q |
1 |
tggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgttta |
63 |
Q |
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||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
39695678 |
tggaggtatcaactttgtgtattacctattgtgctctatttcttacaagtatgaaaatgttta |
39695740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39934435 - 39934381
Alignment:
| Q |
1 |
tggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaa |
55 |
Q |
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| T |
39934435 |
tggagctatcaactttgtgtattatttactgtgctctatttcttacaaatatgaa |
39934381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 39928778 - 39928696
Alignment:
| Q |
11 |
aactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatgatgaatgttatc |
93 |
Q |
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|||||||||||||||||| | || ||| | |||||||||||||||||||||| |||| | |||||||||||| ||||||||| |
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| T |
39928778 |
aactttgtgtattacttattttgttcttctccttacaagtatgaaaatgtttaagaggatgtgatgttatgataaatgttatc |
39928696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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