View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_high_3 (Length: 286)
Name: NF2048_high_3
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 36552047 - 36552321
Alignment:
| Q |
1 |
ttctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaa |
100 |
Q |
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| T |
36552047 |
ttctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaa |
36552146 |
T |
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| Q |
101 |
atctttcaccttgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatg |
200 |
Q |
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| T |
36552147 |
atctttcaccttgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatg |
36552246 |
T |
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| Q |
201 |
ttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgtatattgttttatctgagctctctgctg |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36552247 |
ttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgtatattgttttatcttagctctctgctg |
36552321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 36560098 - 36559824
Alignment:
| Q |
1 |
ttctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560098 |
ttctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaa |
36559999 |
T |
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| Q |
101 |
atctttcaccttgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatg |
200 |
Q |
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| T |
36559998 |
atctttcaccttgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatg |
36559899 |
T |
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| Q |
201 |
ttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgtatattgttttatctgagctctctgctg |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36559898 |
ttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgtatattgttttatcttagctctctgctg |
36559824 |
T |
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