View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_high_6 (Length: 245)
Name: NF2048_high_6
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_high_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 36547871 - 36548101
Alignment:
| Q |
15 |
gttttaacatcatagtaatgaggcatctcatggctgaagctactttcttaatctacacatagctgcaggttgttttcgtgatggaaaataaatggatcaa |
114 |
Q |
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| T |
36547871 |
gttttaacatcatagtaatgaggcatctcatggctgaagctactttcttaatctacacatagctgcaggttgttttcgtgatggaaaataaatggatcaa |
36547970 |
T |
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| Q |
115 |
gaaacaaatttttcccacaaagttagttgcgatatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacac |
214 |
Q |
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| T |
36547971 |
gaaacaaatttttcccacaaagttagttgcgatatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacac |
36548070 |
T |
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| Q |
215 |
ttttccacctttgaaataactacttattgcc |
245 |
Q |
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| T |
36548071 |
ttttccacctttgaaataactacttattgcc |
36548101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 36560444 - 36560214
Alignment:
| Q |
15 |
gttttaacatcatagtaatgaggcatctcatggctgaagctactttcttaatctacacatagctgcaggttgttttcgtgatggaaaataaatggatcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560444 |
gttttaacatcatagtaatgaggcatctcatggctgaagctactttcttaatctacacatagctgcaggttgttttcgtgatggaaaataaatggatcaa |
36560345 |
T |
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| Q |
115 |
gaaacaaatttttcccacaaagttagttgcgatatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacac |
214 |
Q |
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| T |
36560344 |
gaaacaaatttttcccacaaagttagttgcgatatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacac |
36560245 |
T |
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| Q |
215 |
ttttccacctttgaaataactacttattgcc |
245 |
Q |
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| T |
36560244 |
ttttccacctttgaaataactacttattgcc |
36560214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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