View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_low_11 (Length: 250)
Name: NF2048_low_11
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_11 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 18153000 - 18153245
Alignment:
| Q |
1 |
tgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgt |
100 |
Q |
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| T |
18153000 |
tgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgt |
18153099 |
T |
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| Q |
101 |
tcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatata |
200 |
Q |
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| T |
18153100 |
tcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatata |
18153199 |
T |
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| Q |
201 |
attcagaaaacacaagttttctggaagcctcctgttcatctctctc |
246 |
Q |
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| T |
18153200 |
attcagaaaacacaagttttctggaagcctcctgttcatatctctc |
18153245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1785736 - 1785691
Alignment:
| Q |
1 |
tgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
46 |
Q |
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| T |
1785736 |
tgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
1785691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 222683 - 222463
Alignment:
| Q |
26 |
gaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccat |
125 |
Q |
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| T |
222683 |
gaacgcccatgaattttctcatcaacttgatgaattaattttaagatataggacttccctattagaacaggttgctcaaaggggtcgcctgttcttccat |
222584 |
T |
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| Q |
126 |
caaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctgga |
225 |
Q |
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||||||||| ||| |||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| || |
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| T |
222583 |
caaatattctgctttttcccgggtactcgggttcaaatacccatggattttttgtttctttactggcttcatataattctgaaaacacaagttttcttga |
222484 |
T |
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| Q |
226 |
agcctcctgttcatctctctc |
246 |
Q |
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| T |
222483 |
agcctcttgctcatatctctc |
222463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23937285 - 23937344
Alignment:
| Q |
1 |
tgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaat |
60 |
Q |
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| T |
23937285 |
tgtaacaagtgcataatgtccactgaaacgtccatgtattttatcatcaacttgatgaat |
23937344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 47586066 - 47586031
Alignment:
| Q |
89 |
ataacaggctgttcaaaaagattccctgttcttcca |
124 |
Q |
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| T |
47586066 |
ataacaggctgttcaaaaagattccctgttcttcca |
47586031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 22998200 - 22998273
Alignment:
| Q |
119 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
192 |
Q |
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| T |
22998200 |
cttccataaaatatttcgctttttcccggatacttaggctgaaatattcatggattggatgtttctttattggc |
22998273 |
T |
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