View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_low_13 (Length: 237)
Name: NF2048_low_13
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_13 |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43307819 - 43308041
Alignment:
| Q |
1 |
atctattgaactattcaagaatctctcaggtttgaactcttcaggttgatcccaatatgcgggatctcttgcaatggcccaagcattgataattactcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43307819 |
atctattgaactattcaagaatctctcaggtttgaactcttcaggttgatcccaatatgcgggatctcttgcaatggcccaagcattgataattactcgt |
43307918 |
T |
|
| Q |
101 |
gtgccagctttgatgtggtaaccctttacggtgatatcttgtctattttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaa |
200 |
Q |
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| T |
43307919 |
gtgccagctttgatgtggtaaccctttacggtgatatcttgtctattttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaa |
43308018 |
T |
|
| Q |
201 |
ccactgcttgtaagtatttcatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43308019 |
ccactgcttgtaagtatttcatg |
43308041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43267222 - 43267444
Alignment:
| Q |
1 |
atctattgaactattcaagaatctctcaggtttgaactcttcaggttgatcccaatatgcgggatctcttgcaatggcccaagcattgataattactcgt |
100 |
Q |
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||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
43267222 |
atctattgaacaattcaagaatctctctggcttgaactcttcaggttgatcccaatgtgtaggatctcttgcaatggcccaagcattgataaaaactcgt |
43267321 |
T |
|
| Q |
101 |
gtgccagctttgatgtggtaaccctttacggtgatatcttgtctattttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaa |
200 |
Q |
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| T |
43267322 |
gtgccagctttgatgtggtgtccatttagtttgatatcttgtctgctttctcttggtactagtaatggaattgagggatgtaaacgtagggtttctttaa |
43267421 |
T |
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| Q |
201 |
ccactgcttgtaagtatttcatg |
223 |
Q |
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| T |
43267422 |
ctactgcatttaagtatttcatg |
43267444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43287023 - 43287245
Alignment:
| Q |
1 |
atctattgaactattcaagaatctctcaggtttgaactcttcaggttgatcccaatatgcgggatctcttgcaatggcccaagcattgataattactcgt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
43287023 |
atctattgaacaattcaagaatctctctggcttgaactcttcaggttgatcccaatgtgtaggatctcttgcaatggcccaagcattgataaaaactcgt |
43287122 |
T |
|
| Q |
101 |
gtgccagctttgatgtggtaaccctttacggtgatatcttgtctattttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaa |
200 |
Q |
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||||||||||||||||||| || |||| ||||||||||||| |||||||||| ||||||| || |||| |||||||| |||| |||||||||| |
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| T |
43287123 |
gtgccagctttgatgtggtgtccatttagtttgatatcttgtctgctttctcttggtactagtaatggaattgagggatgtaaacgtagggtttctttaa |
43287222 |
T |
|
| Q |
201 |
ccactgcttgtaagtatttcatg |
223 |
Q |
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| ||||| | ||||||||||||| |
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| T |
43287223 |
ctactgcatttaagtatttcatg |
43287245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43274487 - 43274709
Alignment:
| Q |
1 |
atctattgaactattcaagaatctctcaggtttgaactcttcaggttgatcccaatatgcgggatctcttgcaatggcccaagcattgataattactcgt |
100 |
Q |
| |
|
|||||||| | |||||||||||||||| || ||||| ||||||||||||| ||||| || || |||||||| ||| |||| ||||||||| || || |
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| T |
43274487 |
atctattggattattcaagaatctctctggcttgaattcttcaggttgattccaatttgtagggtctcttgctatgctccaattattgataataacatgt |
43274586 |
T |
|
| Q |
101 |
gtgccagctttgatgtggtaaccctttacggtgatatcttgtctattttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaa |
200 |
Q |
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||||||||||| ||||||||||| |||| ||||||||||| | ||| ||||||| ||||||| || | |||||||||||| |||| |||||||||| |
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| T |
43274587 |
gtgccagctttaatgtggtaaccatttaatttgatatcttgtgtgtttactcttgggactagtaatggaaatggaggatgtaaacgtagggtttctttaa |
43274686 |
T |
|
| Q |
201 |
ccactgcttgtaagtatttcatg |
223 |
Q |
| |
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||||||| | |||||| |||||| |
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| T |
43274687 |
ccactgcctttaagtagttcatg |
43274709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35650284 - 35650196
Alignment:
| Q |
1 |
atctattgaactattcaagaatctctcaggtttgaactcttcaggttgatcccaatatgcgggatctcttgcaatggcccaagcattga |
89 |
Q |
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|||||||||||| |||| || || || ||||| |||||| ||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
35650284 |
atctattgaactgttcataaacctttctggtttaaactctagaggttgatcccaacttgaaggatctcttgcaattgcccaagcattga |
35650196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1270 - 1182
Alignment:
| Q |
1 |
atctattgaactattcaagaatctctcaggtttgaactcttcaggttgatcccaatatgcgggatctcttgcaatggcccaagcattga |
89 |
Q |
| |
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|||||||||||| |||| || || || ||||| |||||| ||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
1270 |
atctattgaactgttcataaacctttctggtttaaactctagaggttgatcccaacttgaaggatctcttgcaattgcccaagcattga |
1182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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