View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_low_14 (Length: 234)
Name: NF2048_low_14
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33803040 - 33803233
Alignment:
| Q |
1 |
atgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33803040 |
atgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaat |
33803139 |
T |
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| Q |
101 |
agtcggatataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg |
194 |
Q |
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| T |
33803140 |
agtcggatataaggaggataatgacatattatctctagccgagatggacgacacacttctcggtcctccattgataaattgagaagtgttgttg |
33803233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33731661 - 33731854
Alignment:
| Q |
1 |
atgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaat |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33731661 |
atgacgaaacagaattagcattactactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaat |
33731760 |
T |
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| Q |
101 |
agtcggatataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg |
194 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
33731761 |
agtcagatataaggaggataatgacatattatctctagtcgagatggacgacacacttctcgatcctccattgataaattgagaagtgctgttg |
33731854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 28755565 - 28755478
Alignment:
| Q |
107 |
atataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg |
194 |
Q |
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| T |
28755565 |
atataaggaggagaatgacatattatctctagccgagatggacgacacacttctcgatcctcctttgataaagtgagaagtgttgttg |
28755478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 28755573 - 28755677
Alignment:
| Q |
90 |
tgtcctccaatagtcggatataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgt |
189 |
Q |
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|||||||||||| | ||||||||| || | ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
28755573 |
tgtcctccaatatcagaatataaggaagagaatgacatattatctctagccgagatggacgacacgcttctcgatcctccattgacaaagtgagaagtgt |
28755672 |
T |
|
| Q |
190 |
tgttg |
194 |
Q |
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||||| |
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| T |
28755673 |
tgttg |
28755677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 6151894 - 6151818
Alignment:
| Q |
1 |
atgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatcggattctacaacaggt |
77 |
Q |
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|||| |||| |||||| |||||||||| |||||| ||||| |||||||||||||| |||| ||| || |||||||| |
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| T |
6151894 |
atgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcagatcctgcaacaggt |
6151818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 32621632 - 32621665
Alignment:
| Q |
85 |
caatttgtcctccaatagtcggatataaggagga |
118 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
32621632 |
caatttgtcctccaatagttggatataaggagga |
32621665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6145474 - 6145414
Alignment:
| Q |
1 |
atgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatc |
61 |
Q |
| |
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||||||||| |||||| |||||||| | |||||| ||||| ||||||||||| ||||||| |
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| T |
6145474 |
atgacgaaatggaattcacattactattgtttcctgcaacaactccacttcttggataatc |
6145414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 33803252 - 33803280
Alignment:
| Q |
195 |
gtagtagtaggaatgatgctaatatttga |
223 |
Q |
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| T |
33803252 |
gtagtagtaggaatgatgctaatatttga |
33803280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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