View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_low_15 (Length: 229)
Name: NF2048_low_15
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_15 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 15996 - 16193
Alignment:
| Q |
17 |
aattatctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15996 |
aattatctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattggg |
16095 |
T |
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| Q |
117 |
ttaactaccagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16096 |
ttaactaccagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
16193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 26164 - 26361
Alignment:
| Q |
17 |
aattatctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26164 |
aattatctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattggg |
26263 |
T |
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| Q |
117 |
ttaactaccagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26264 |
ttaactaccagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
26361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 36330 - 36527
Alignment:
| Q |
17 |
aattatctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330 |
aattatctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattggg |
36429 |
T |
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| Q |
117 |
ttaactaccagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36430 |
ttaactaccagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
36527 |
T |
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