View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_low_16 (Length: 204)
Name: NF2048_low_16
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 36547689 - 36547515
Alignment:
| Q |
12 |
caaagggaggggattacatagtaaaggacatnnnnnnnntgagaagtcacatttcatttttaccattatttagccattacttacattcccaagaagcttt |
111 |
Q |
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| T |
36547689 |
caaagggaggggattacatagtaaaggacataaaaaaaatgagaagtcacatttcatttttaccattatttagccattacttacattcccaagaagcttt |
36547590 |
T |
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| Q |
112 |
tggcacaatttaaaccacctacttccgtgcgacatgtaaacataaaaaatcaaaatatagttcatatattttcaa |
186 |
Q |
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| T |
36547589 |
tggcacaatttaaaccacctacttccgtgcgacatgtaaacataaaaaatcaaaatatagttcatatattttcaa |
36547515 |
T |
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Target: chr3; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 36560626 - 36560800
Alignment:
| Q |
12 |
caaagggaggggattacatagtaaaggacatnnnnnnnntgagaagtcacatttcatttttaccattatttagccattacttacattcccaagaagcttt |
111 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560626 |
caaagggaggggattacatagtaaaggacataaaaaaaatgagaagtcacatttcatttttaccattatttagccattacttacattcccaagaagcttt |
36560725 |
T |
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| Q |
112 |
tggcacaatttaaaccacctacttccgtgcgacatgtaaacataaaaaatcaaaatatagttcatatattttcaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560726 |
tggcacaatttaaaccacctacttccgtgcgacatgtaaacataaaaaatcaaaatatagttcatatattttcaa |
36560800 |
T |
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