View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_low_3 (Length: 355)
Name: NF2048_low_3
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_3 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 41969 - 41650
Alignment:
| Q |
16 |
atcgtgatagcaataccctgaatttgaccgtggaaccgcatggtgcctttacgagcagaaccgttcaaggcattcagtgacaagtggtactcctccgtaa |
115 |
Q |
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| T |
41969 |
atcgtgatagcaataccctgaatttgactgtggaaccgcatggtgcctttacgagcagaaccgttcaaggcattcagtgacaagtggtgctcctccgtaa |
41870 |
T |
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| Q |
116 |
caataggtggtgtttcagggtcagttgatggtgtgatttgcggtggtggtgggtcaggttcttcttcttcttcagtttgaaataagaaataatgacgatt |
215 |
Q |
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| T |
41869 |
caataggtggtgtttcagggtcagctgatggtgtgatttgttgtggtggtggttcaggttcttcttcttcttcagtttggaataagaaataatgacgatt |
41770 |
T |
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| Q |
216 |
tggacatttatgagatatagagaatcgttcatcacaataataacataatcttttttctcttctcagcatcatctcagatctagtgatgtttttaactggg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
41769 |
tggacatttatgagatatagagaatcgttcatcacaataatagcataatcctttttctcttctgagcatcatctcagctctagtgatgtttttaactggg |
41670 |
T |
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| Q |
316 |
tggccttttgtgggtaggtt |
335 |
Q |
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| T |
41669 |
tggccttttgtgggtaggtt |
41650 |
T |
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